Salinicola sp. JS01: QO259_05175
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Entry
QO259_05175 CDS
T09138
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
sajs
Salinicola sp. JS01
Pathway
sajs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sajs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
QO259_05175 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sajs03400
]
QO259_05175 (recB)
Enzymes [BR:
sajs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
QO259_05175 (recB)
DNA repair and recombination proteins [BR:
sajs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
QO259_05175 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_30
AAA_11
AAA_12
Motif
Other DBs
NCBI-ProteinID:
WIX34064
UniProt:
A0A9Y2G783
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All DBs
Position
1153788..1157726
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AA seq
1312 aa
AA seq
DB search
MSERVVALELDTLPLTGRHLIEASAGTGKTFTLAALYVRLVLGPLPGRETLDFPRPLTPP
EILVVTFTEAATAELRERIRARLKQAREWLLASPDARRDRVLATLLAPLVAAGETACRSG
ARRLDQAARLMDEAAIFTIHGFCQRMLTRHAFDAGARFSAELLQEGRTLLTQVVEDYWRR
EFYPLDARWQRQIRAHWSGPEALAAALAPLLKDGQPQPLWVGGEAVTAPPSLETLFAGAE
RTLGARESIEAEVAASWDEATIRETLAQAFEAGALNKRSYKAEELETRLAAYAAWLARGE
FEAAEEISDSSGRFWLGQAKLDGATRKGATPPAHPFFAALDRLAEQVRPFDAIAARVLVH
ARDRVAQAFTQEKRRQGVWEFADLLNDLDAALTPAAGAGDEAAAWRLAARIRHELPVALI
DEFQDTDPVQYRIFSRLYRAPQSDPATTALLMIGDPKQAIYAFRGADIHTYLRARRATPS
RFTLLRNFRSTEAMVAATNALFAGHPEPFGSAEIPFVAVDASAKSTHLVTQEGAPVAALG
AWWPDSERYAQGDYQARMATATRAEVQRLLEGAWHFTGEHGERKLQPADIAILVRNGPEA
LKVRRALAEGGIRSVYLSERSSVFDTPQAFELLQLFEAVAQPRQDTRLKAALASRLLNDS
PTALEALLADELAWEREVERFGDYHRLWQRRGVLPMLRAVMRDFRIAERLAARADGERAL
TDLLHLGELAQAAQQRLDGEQALLRWWHRALQAGETSLDSQALSQRLESDEELVQVITVH
KSKGLEYPIVLLPFVCSHRPAEPDRQTQLLALRPPEGEGSVMVAGADETQRRDADLARLD
EDVRLLYVALTRAIYACRLGVAHVGRGRSRGGCLHETALGRLLGSQAEDDGEALLARLQA
AQRAGWLALSAPPEPPAWRLRQAQTAGATKPARRFRGTIDDDWWIASYTALIADARLGVG
EDLPATLDVEVSQERDPVPRPRIRSLIDFPRGPRPGTFLHGLLERLDFDRLAMPGYAQEV
RREVARSLALGGYEADWAELLGDWLTQRLCQPLLRGAAGEVRLTALSAWRTELEFWLPAT
AAWSAPLDRLVSRLEPLPGQRPRLAPRKLNGMLKGYIDLVFEAHGRWYVLDWKSNHLGDD
PADYVGERLAAAMVAHRYDLQYVLYVLALHRLLAARLEDYDYARHMGGACYVFLRGLAPG
AVHETPADTPPDAAPGAVHETPADTPPDAAPGAVHETPADTPPDPAPGPFNMAPDAAPGA
VHEVPADTPPDPAPGVFFRRPSQALIEALDAWLDGDEGPANALLAMAEEIET
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcgcgtcgtcgccctcgaactcgacaccctgccgctgaccgggcgccacctg
atcgaggccagcgccggcaccggcaagaccttcaccctggccgcgctctatgtacgcctg
gtgctcgggccgctgcccgggcgcgagacgctggactttccgcgtccgctgaccccgccg
gagattctggtggtgaccttcaccgaagcggccacggcggagctgcgcgagcggatccgg
gcgcggctcaagcaggcccgcgagtggctgctggcgagcccggatgcgcgccgtgaccgg
gtgttggcgaccctgctggcgcccttggtggcggcgggtgagacggcctgtcgcagcggc
gcacggcgcctcgatcaggccgcgcggctgatggacgaggcggcgatcttcaccatccac
ggcttctgccagcgcatgctcacccgccacgccttcgatgctggcgcgcgcttctccgcc
gagctgttgcaggagggtcgcacgctgctgacgcaggtggtggaggactactggcggcgc
gaattctacccgctcgacgcgcgctggcagcgtcagatccgcgcccactggagtggcccg
gaggcactggccgcggcgctggcgccgctgctcaaggatggccagccgcagccgctgtgg
gtcggcggcgaggcagtcaccgcgccgccctcgctcgagaccctgttcgccggcgccgaa
cgcacgctcggcgcgcgcgagtcgatcgaagcggaggtggccgccagttgggacgaggcg
acaatccgcgagacgctcgcgcaggcgttcgaggccggggcgctcaacaagcgcagctac
aaggccgaggagctggagacacgtctggcggcctacgccgcctggctcgcccgcggcgag
ttcgaggcggcggaggagatcagcgacagcagcgggcgcttctggctgggccaggccaag
ctcgacggcgctacccgcaagggcgccacgccgccggcgcaccccttcttcgccgcgctc
gaccgcctggccgagcaggtgcgcccgttcgatgccatcgccgcccgggtgctggtgcac
gcccgcgaccgcgtggcccaggcctttacccaggagaagcgccgccagggcgtgtgggag
ttcgccgatctgctcaacgatctggatgcggcactgaccccggcggcgggagccggcgac
gaggccgccgcctggcgcctggcggcgcgcatccggcacgagctgccggtggcgctgatc
gatgagttccaggacaccgacccggtacagtaccgcatcttctcgcggctctaccgcgcg
ccgcagagcgacccggcgaccacggcgctgctgatgatcggggatcccaagcaggcgatc
tacgccttccgtggcgccgatatccatacctacctgcgcgcccggcgggccaccccgagc
cgcttcaccctgctgcgcaatttccgctccaccgaggccatggtggcggcgaccaatgcg
ctcttcgccggccatccggaacccttcggcagcgccgagattcccttcgtcgcggtggat
gccagcgccaagtcgacgcatctggtgacccaggagggcgcaccggtggcggcacttggc
gcctggtggccggatagcgagcgctacgcccagggtgactatcaggcgcgcatggcgacg
gcgacccgggccgaggtgcagcggctgctggagggcgcgtggcactttaccggcgagcac
ggcgagcgcaagctccagcccgccgatatcgcgattctggtgcgcaatggccccgaggcg
ctcaaggtgcgccgggcgctggccgagggcggcattcgcagcgtctatcttagcgagcgc
tccagcgtgttcgataccccgcaggcgttcgagctgttgcagctgttcgaagcggtggcg
cagccgcgtcaggacacccggctcaaggcggcgctcgcctcgcggctgctcaacgacagc
cccacggcgctggaggcgctgctcgccgacgagctggcctgggagcgcgaggtcgagcgc
ttcggtgactatcaccggctgtggcagcggcgcggggtgctgccgatgctgcgcgcggtg
atgcgcgattttcgcatcgccgagcggctggccgcccgcgccgacggcgagcgcgcgctg
accgacctgctgcatctgggcgagctggcccaggccgcacagcagcgactcgatggcgag
caggcgctgctgcgctggtggcaccgggcgctgcaggcgggcgagacgagtctcgacagc
caggcgctgagccagcgcctggagagcgacgaggagctggtgcaggtgattaccgtgcac
aagtccaaggggttggagtatcccatcgtgctgctgccgttcgtctgctcccaccgcccg
gcggagcccgaccgccagacccagctgctggcgctgcgcccgcccgagggcgagggcagc
gtgatggtcgccggcgccgacgagacgcagcggcgcgacgccgatctggcgcggctcgac
gaggacgtacgcctgctctacgtggcgctgacccgggcgatctacgcctgccgcctgggc
gttgcccacgtggggcgcgggcgcagccgcggcggctgtctccacgagaccgcgctgggg
cggctgctcggcagccaggccgaggatgacggcgaggcgctgctggcacgcctgcaggcc
gcccagcgtgccggctggctcgcgctttcggcgcctcccgaaccgccggcctggcgcctg
cgccaggcccagacggcgggtgcgaccaagccggcgcggcgcttccgggggacgatcgac
gatgactggtggatcgcctcctatacggcgctgatcgccgatgctcggctgggcgtcggc
gaggatctgccggcgacactggatgtcgaggtgagccaggagcgtgacccggtgccgcgg
ccgcggattcgctcgttgatcgactttccgcgtgggccgcggccgggcacctttctgcac
ggcctgctcgaacgcctcgacttcgaccgcctggcgatgccgggctacgcccaggaggtg
cgccgtgaggtagcgcgcagcctggccctgggcggttacgaggcggactgggccgagctg
ctcggtgactggctcacccagcgtctgtgccagccgctgctgcgcggagccgccggcgag
gtgcggcttaccgcgctctcggcatggcgtaccgagctcgagttctggctgccggcgacg
gcggcctggagcgcacccctcgatcgcctggtgagccggctggagccgctgcccgggcag
cgcccgcggctggcgccgcgcaagctcaacggcatgctcaagggttacatcgatctggtg
ttcgaggcccacgggcgctggtacgtgctcgactggaaatccaaccatctcggcgatgac
cccgccgattatgtgggcgagcggctggcggcggcgatggtcgcccaccgttacgacctg
cagtacgtgctctacgtgctggcgctgcatcggctgctggcggcgcgcctggaggattat
gactacgcccgccacatgggcggggcctgctatgtgttcctgcgcggcctggcgccgggg
gctgtccatgagacgcctgccgatacgccgcccgacgccgccccgggggctgtccatgag
acgcctgccgatacgccgcccgacgccgccccgggggctgtccatgagacgcctgccgat
acgccgcccgaccccgcgccggggcctttcaatatggcgcccgacgccgcgccgggggct
gtccatgaggtgcctgccgatacgccgcccgaccctgcgcccggcgtctttttccggcgt
ccgtcacaggcactgatcgaggcgctggatgcctggctcgatggcgacgagggcccggcc
aatgcgctgctggcgatggccgaggagatcgagacatga
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