Salinicola sp. JS01: QO259_06600
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Entry
QO259_06600 CDS
T09138
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sajs
Salinicola sp. JS01
Brite
KEGG Orthology (KO) [BR:
sajs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sajs03019
]
QO259_06600 (hrpA)
Enzymes [BR:
sajs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
QO259_06600 (hrpA)
Messenger RNA biogenesis [BR:
sajs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
QO259_06600 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
nSTAND3
AAA_19
T2SSE
AAA_25
NACHT
PhoH
SRP54
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WIX34322
UniProt:
A0A9Y2DA36
LinkDB
All DBs
Position
1445395..1449384
Genome browser
AA seq
1329 aa
AA seq
DB search
MSATAANASQALNQLQARLDACLLRDAHALRGRLARLERRAREGKPIDRSLGEIEARIDA
SQAQVERRRRERVTLDYPESLPVAARRETILEALREHQVVVVAGETGSGKTTQLPKLCLE
LGLGRRGMIGHTQPRRLAARSVATRLAEELEVPLGEQVGYQVRFTDQSGDATLVKLMTDG
ILLAETQHDPDLLRYEAIIIDEAHERSLNIDFLLGYLKRLSARRPDLKIIITSATIDVDR
LSRHFAREIDGETRPAPVVEVSGRAYPVEVRYRPLVREARDEEDLTLQEGIVAAVEEIEQ
IERDKRWYSGPRDILIFLPGEREIRETADLLRRLELKSTEILPLYARLSNAEQNRVFQSH
AGRRIVLSTNVAETSLTVPGIRYVIDPGLVRMSRYSFRAKVQRLPIEPVSQASANQRKGR
CGRIADGVCIRLYSEEDFLSRPEFTEPEIQRTNLAAVILSMLSLKLGEVLDFPFVDAPDP
RVVKDGYRLLFELGAVDGGERLSDIGRRLSRLPIDPRLGRMVLAGEQFGCLREALIVVSA
LATQDPRERPAEKRQAADQKHRQWDDPDSDFVAWLNLWQGFEAARDELSGSQLRRWCRDQ
YLSYLRLREWHDTYRQLRQLVREMKLEPSSAMQPGEGEGAAPRVDAARLHQALLAGLLSH
LGQLQPESREFLGARNRKFMLHPASGLAKKPPKWVMAGELVETSRLFARDCARIKPEWIE
PQAGHLVKRAYSDPHWERKRAQVVALEQVTLFGLPIVSGRRVDYAKVAPAEARELFIRRA
LVEGDYDTRAAFFSHNRAMVAEVEELEDRARKRDILVDEETLFAFYDERIPAEVASGRDF
EAWRKRAERETPELLKLDKAALMAREADDVSVEQYPDELVFNGVRYPLSYHFAPGASDDG
VTLTVPAVMLAQLPEGRLSWLVPGLLRDKCIALLKALPKTLRRQVVPIPDWVDAALQTLT
PDARPVETALGEFLRVKTGVRLDPSAWRLDQLEPHLVMNLRVVDHEGQVLGEGRDLAALR
ERFGDAAAAGARAMAQQQEAPSETLEALPQTPLPDSSTSRQAGIQVEVYPALVPAGDALQ
IAWFDHAERATAAHRDGVVALARRRLPELLRYLQRELPQLKACALLFTKVGTREQLTQDV
IDAVLAQTVAADPLPRSGEAFDARLEQWRGDLVGYAERLLDDLHKALEGHLAVTKQLKGN
VSFALALSYSDLKAQMQRLVYPGFVRDAGPWLEHYPRYLQAAEIRLEKAPRDRRRDQLAM
QQVQEWESRLDARRQAAEREGVVPAELIEFGWWLQEFRVSLFAQQLGTLESVSEKRLARR
WREITGQAL
NT seq
3990 nt
NT seq
+upstream
nt +downstream
nt
ttgagcgccaccgctgccaacgcttcccaagctctgaaccaactgcaggcgcggctagac
gcctgtctgctgcgcgatgcccacgccctgcgcgggcgcctggcgcggctcgagcggcgt
gcccgcgagggcaagccgatcgaccgctcgctgggcgaaatcgaggcccgcatcgacgcc
tcccaggcgcaggtcgagcgccgacgtcgagagcgcgtcaccctcgactaccccgagtcg
ctgccggtggcggcgcggcgcgagacgatcctcgaggcgctgcgtgagcatcaggtcgtg
gtggtggccggtgagaccggctcgggcaagaccacccagctacccaagctatgtctcgaa
ctgggcctgggccgacgcggcatgatcgggcatacccagccgcggcgcctggcggcgcgc
tcggtggcgacccggttggcggaggagctggaggtaccgctgggggagcaggtcggctat
caggtgcgcttcaccgaccagagcggtgacgccaccctggtcaagctgatgaccgacggc
attctgctggccgagacccagcatgatccagacctgctgcgctatgaggcgatcatcatc
gacgaggcccacgagcgcagcctcaacatcgactttctgctcggctatctcaagcgcctc
agcgcgcgccggcccgatctcaagatcatcatcacttccgccaccatcgacgtcgatcgg
ctgtcgcgccacttcgcccgtgagatcgacggcgagacgcgcccggcgccggtggtcgag
gtctccgggcgtgcttacccggtcgaggtgcgctaccgcccgctggtgcgcgaggcccgt
gacgaagaggacctgacgctgcaggaggggatcgtggcggcggtcgaggagatcgagcag
atcgagcgcgacaagcgctggtactcggggccacgcgatatcctgatcttcctgcccgga
gagcgcgagattcgcgagaccgccgatctgctgcgccggctcgagctcaagagtaccgag
atcctgccgctctacgcgcggctctccaacgccgagcagaaccgcgtgttccagagccat
gccgggcgtcgcatcgtgctctctaccaacgtcgccgagacctcgttgacggtgcccggc
atccgctatgtgatcgatccggggctggtgcgcatgagccgctacagcttccgggccaag
gtgcagcggctgccgatcgagccggtgagtcaggccagcgccaatcagcgcaaggggcgc
tgcgggcgcatcgccgatggcgtatgcatccgtctctacagcgaggaggattttctctcc
cggcccgagttcaccgagcccgagatccagcgcaccaatctggcggcggtgatcctgtcg
atgctctcgctcaagctcggcgaggtactcgatttccccttcgtcgacgcccccgatccg
cgggtggtcaaggatggctaccgcctgctgttcgaactcggcgcggtggacggcggtgag
cgcctgagcgacatcggacgacggctctcgcggctgccgatcgatccgcggctggggcgt
atggtgctggccggcgagcagttcggctgtctgcgcgaggcgctgatcgtggtcagcgcg
ctggccacccaggacccgcgcgagcgtccggccgagaagcgccaggccgccgatcagaag
catcgccagtgggatgaccccgattccgatttcgtggcctggctcaatctgtggcagggc
ttcgaggcggcccgcgacgagctttccggcagccagctgcgacgctggtgccgggaccag
tatctgagctacctgcgcctgcgcgagtggcacgatacctaccgtcagctgcgccagctg
gtgcgcgagatgaagctcgagccgagcagcgccatgcagccgggtgagggcgagggggcc
gcacccagggtggacgccgcccgccttcaccaggcgctgctcgccggactgctgtcgcat
ctcggccagctgcagccggagagccgtgaattcctcggcgcgcgcaatcgcaagttcatg
ctccatcccgcttcggggttggccaagaagccgcccaagtgggtaatggccggcgagctg
gtcgagaccagtcggctgttcgcccgtgactgcgcgcgcatcaagccggagtggatcgag
ccccaggcgggtcatctggtcaagcgcgcttacagcgacccgcactgggagcgcaagcgc
gcccaggtggtagcgctagagcaggtcaccctgttcgggctaccgatcgtcagcggccgg
cgcgtcgactacgccaaggtggcgccggcggaggcgcgcgagctgttcattcggcgcgcg
ctggtcgagggtgactacgacactcgcgccgcattcttctcccacaaccgcgcgatggtg
gcggaggtcgaggaactggaggatcgcgcgcgcaagcgggatattctggtcgacgaagag
acgctgttcgccttctacgacgagcgcatccctgccgaggtcgccagcgggcgcgacttc
gaagcctggcgcaagcgcgccgagcgcgagacccccgagctgctgaaactcgacaaggcc
gcgctgatggcgcgcgaggccgacgacgtcagcgtcgagcagtacccagacgagctggtc
ttcaacggtgtgcgctatccgctcagctatcactttgcgccgggggcgagcgacgacggt
gtgacccttaccgtgccggcggtcatgctggcccagctgccggaggggcggctgtcgtgg
ctggtgccggggctcttgcgcgacaagtgcatcgcgctgctcaaggcgctgcccaagacg
ctgcggcgtcaggtggtgccgatccccgactgggtcgatgcggcgctgcagacgctgacc
cccgatgcgcgtccggtggagaccgcgctgggcgagttcctgcgggtcaagaccggggta
cgtcttgacccctcggcgtggcggctcgatcagctcgaaccgcatctggtgatgaatctg
cgggtggtcgatcacgagggccaggtgctgggcgaggggcgcgacctggccgctctgcgc
gagcgcttcggcgacgccgccgcagccggtgcccgtgccatggcgcagcagcaggaggcc
cccagcgagaccctggaggcgctgccgcagaccccgctgccagactccagcaccagccgc
caggcgggtatccaggtcgaggtctatccggccctggtgccggccggtgacgcgctccag
atcgcctggttcgaccacgccgagcgcgccaccgcggcgcaccgggatggcgtggtggcg
ctggcgcgccgccgcctgccggagcttctgcgctacctgcagcgggagctgccgcagctc
aaggcgtgcgcgctgctgttcaccaaggtgggcacgcgcgagcaactgacccaggacgtg
atcgatgcggtgctggcgcagaccgtcgctgccgacccgctgccgcgctcgggcgaggct
ttcgatgcccgcctcgagcagtggcggggcgatctggtgggctacgccgagcggctgctc
gatgacctgcacaaggcgctggaggggcacctggcggtgaccaagcagctcaagggtaac
gtcagttttgccctggccctgagctacagtgatctcaaggcccagatgcagcgtctcgtc
tatccgggcttcgtgcgcgatgcggggccttggctcgaacactatccgcgttacctgcag
gcggccgagatccggctggagaaggcgccgcgcgatcgtcgtcgtgatcaactggcgatg
caacaggtgcaggagtgggagagccgactcgatgcccgccgtcaggccgccgagcgcgag
ggcgtcgtacccgccgagctgatcgagttcggctggtggctgcaggaatttcgggtgtcg
ctgttcgcccagcagctggggacactcgagagtgtctcggagaagcgcctggcacggcgc
tggcgcgagatcaccgggcaggcgctatga
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