Salinicola sp. JS01: QO259_07625
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Entry
QO259_07625 CDS
T09138
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
sajs
Salinicola sp. JS01
Pathway
sajs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sajs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QO259_07625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sajs03019
]
QO259_07625
Enzymes [BR:
sajs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QO259_07625
Messenger RNA biogenesis [BR:
sajs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QO259_07625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
WIX34507
UniProt:
A0A9Y2DG29
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All DBs
Position
1686043..1687332
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AA seq
429 aa
AA seq
DB search
MSESDNTQAPAQNRRPKRRRRKPRKSQSRNANGWSLDQFPVAPVAGRWRFHDFDLPLALM
RAIHAEGFEYCTPIQAEALMHTLLGGDVVGKAQTGTGKTAAFLISMLAYFLEEEAPDGQK
PGTPRALVVAPTRELALQIEKDAKALARFTTLNVASVVGGMDYQKQREQLGKNLDILVAT
PGRLLDFQQKRDIDLSQVEVLVLDEADRMLSMGFIPDVKRIIRYTPKREERQTFLFSATF
TPDILNLSEQWTHNPAHVEIEVTTENAANIDQRVYLVSDSDKRRLLINLLKQESMERVIV
FGNRRDLVRELDGLLREAGINVAMLSGDVPQNQRISTLEKFREGEIQVLVATDVAGRGIH
IEDVSHVVNYTLPEDPEDYVHRIGRTGRAGAKGVSISFVGEEDAFSLPEIEAYIKDKLPC
EQPPESMLV
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagtgagtcggacaacacccaggcaccggcacagaaccgcagacccaagcggcgtcga
cgcaagcctcgtaaatcgcagtcgcgcaacgccaacggctggtcgctggatcagtttccg
gtcgcgcccgtggccggccgctggcggttccacgatttcgatctgccgctggcgctgatg
cgcgccatccacgccgaggggttcgagtactgcaccccgatccaggccgaagcgctgatg
cacacgctgctaggcggcgacgtggtgggcaaggcgcagaccggtaccggcaagacggcc
gcgtttctgatctcgatgctcgcctatttcctcgaggaggaggcgccggacggccagaag
ccggggacgccgcgggcactggtcgtcgcccccacccgcgagctggcgctgcagatcgag
aaggacgccaaggcgctggcgcgcttcaccacgctcaacgtggccagcgtggtcggtggc
atggattaccagaagcagcgcgagcagttgggcaagaacctggacatcctggtggccacg
ccgggccggctgctggacttccagcagaagcgcgacatcgatctctcccaggtcgaggtg
ctggtgctcgatgaagcggatcgcatgctgtcgatgggtttcatccccgacgtcaagcgc
atcatccgctacacgcccaagcgtgaagagcgccagaccttcctgttctcggcgaccttt
accccggatattctcaacctgtccgagcagtggacccacaatccggcccacgtcgagatc
gaggtgaccaccgagaacgccgccaacatcgatcagcgcgtctatctggtcagcgacagt
gacaagcgccggctgctgatcaacctgctcaagcaggagtcgatggagcgcgtgatcgtc
ttcggcaaccgccgcgatctggtgcgtgagctcgatggactgctgcgcgaggcgggcatc
aacgtagcgatgctctccggcgacgtgccgcagaatcagcgtatcagcacgctcgagaag
ttccgcgagggtgagatccaggtgctggtggcgaccgatgtcgccgggcgcggcattcat
atcgaggatgtcagccacgtggtcaactacaccctgcccgaggacccggaagactacgtg
caccgtatcggtcgtaccggtcgcgccggcgccaagggggtctcgatcagtttcgtcggc
gaggaggacgcgttctcgctgcccgagatcgaggcttatatcaaggacaagctgccgtgc
gagcagccgccggagtcgatgctcgtctga
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