Streptococcus agalactiae A909 (serotype Ia): SAK_0224
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Entry
SAK_0224 CDS
T00278
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sak
Streptococcus agalactiae A909 (serotype Ia)
Pathway
sak03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sak00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAK_0224 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sak03021
]
SAK_0224 (rpoC)
03400 DNA repair and recombination proteins [BR:
sak03400
]
SAK_0224 (rpoC)
Enzymes [BR:
sak01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAK_0224 (rpoC)
Transcription machinery [BR:
sak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAK_0224 (rpoC)
DNA repair and recombination proteins [BR:
sak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAK_0224 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_3
RNA_pol_Rpb1_2
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ABA44773
UniProt:
Q3K3L1
LinkDB
All DBs
Position
192907..196557
Genome browser
AA seq
1216 aa
AA seq
DB search
MVDVNRFKSMQITLASPSKVRSWSYGEVKKPETINYRTLKPEREGLFDEVIFGPTKDWEC
ACGKYKRIRYKGIICDRCGVEVTRAKVRRERMGHIELKAPVSHIWYFKGIPSRMGLTLDM
SPRALEEVIYFAAYVVIDPMDTPLEPKSLLTEREYREKLQEYGYGSFVAKMGAEAIQDLL
KRVDLDAEIAVLKEELKSATGQKRVKAVRRLDVLDAFKKSGNKPEWMVLNILPVIPPDLR
PMVQLDGGRFAASDLNDLYRRVINRNNRLARLLELNAPGIIVQNEKRMLQEAVDALIDNG
RRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFSGRSVIAVGPTLKMYQCGVPR
EMAIELFKPFVMREIVARDLAGNVKAAKRMVERGDERIWDILEEVIKEHPVLLNRAPTLH
RLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHVPLSEEAQAEARLLMLAAEHI
LNPKDGKPVVTPSQDMVLGNYYLTMEDAGREGEGMIFKDHDEAVMAYQNGYVHLHTRVGI
AVDSMPNKPWTEEQKHKIMVTTVGKILFNDIMPEDLPYLIEPNNANLTEKTPDKYFLEPG
QDIQAVIDNLEINIPFKKKNLGNIIAETFKRFRTTETSAFLDRLKDLGYYHSTLAGLTVG
IADIPVIDNKAEIIDAAHHRVEDINKAFRRGLMTEEDRYVAVTTTWREAKEALEKRLIET
QDPKNPIVMMMDSGARGNISNFSQLAGMRGLMAAPNGRIMELPILSNFREGLSVLEMFFS
THGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREDDCGTDRGLTITAITDGKEVTETL
EERLIGRYTKKSIKHPETGEILVGADTLITEDMAAKVVKAGVEEVTIRSVFTCNTRHGVC
RHCYGINLATGDAVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVASNTDITQGLPRIQE
IFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVVPFTARMKVEVGDE
VARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGDKHVEVMVRQMLRK
VRVMDPGDTDLLPGTLMDISDFTDANKDIVISGGIPATSRPVLMGITKASLETNSFLSAA
SFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIPAGTGMARYRNIEPLAVNEVEIIEGT
PVDAEVTEVSTPTTED
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
gtggttgacgtaaatcgttttaaaagtatgcaaatcacattagcatcaccaagtaaggtc
cgttcatggtcttatggtgaagttaaaaaacctgaaacaatcaactaccgcacattgaaa
ccagaacgtgaaggactttttgatgaagttatttttggtccaacaaaagattgggaatgt
gcgtgtggaaaatacaaacgtattcgttacaaaggaatcatttgtgaccgttgtggcgtt
gaagtaacccgtgcaaaagttcgtcgcgaacgtatgggacatatcgagttaaaagcacca
gtatctcatatctggtatttcaaaggtatcccatcgcgtatggggctcacattggatatg
agtcctcgtgcacttgaagaagttatttattttgcggcttatgttgttatcgatccaatg
gacacaccattagaaccgaagtcactccttactgagcgtgaataccgtgaaaaacttcaa
gagtacggttacggttcgtttgttgctaaaatgggtgctgaagccattcaagatcttctt
aaacgcgttgatttagatgcagaaatcgcagttcttaaagaggagttgaaatcagcgaca
ggtcaaaaacgtgtgaaagcagttcgtcgtctggatgtgttagatgcctttaaaaaatct
ggaaataaaccagaatggatggttcttaacattttaccggttatcccaccggatcttcgt
ccgatggttcaattagatggtggtcgttttgcggcatcagacttgaatgacctttaccgc
cgtgttattaaccgtaacaatcgtttggcacgtttgttggaattaaatgctcctggcatc
atcgttcaaaatgaaaaacgtatgttacaagaagctgttgatgcgcttatcgacaatggt
cgtcgtggtcgtccaattaccggaccaggtagtcgtcctttgaaatcattaagccatatg
cttaaaggtaaacaaggtcgtttccgccaaaacttgcttggtaaacgtgttgacttctct
ggacgttccgttattgctgttggtccaacactcaaaatgtaccaatgtggtgtaccacgt
gaaatggctattgagctcttcaaaccttttgtaatgcgtgaaatcgttgctcgtgacctc
gcagggaacgttaaagcagctaaacgtatggttgaacgtggggacgagcgtatttgggac
atcttagaagaagttattaaagagcacccagtacttctaaaccgtgcacctactcttcac
agattaggtatccaagcgtttgaacctgtccttattgatggtaaggcgcttcgtcttcac
ccacttgtatgtgaggcctacaatgctgactttgatggagaccaaatggccatccacgtt
ccattgtctgaagaagcccaagcagaagctcgtcttttgatgcttgctgcagagcacatc
cttaaccctaaagatggtaagccagtcgtaacaccatctcaggacatggttttaggaaat
tactacctgactatggaagatgctggtcgtgaaggtgaaggcatgattttcaaagatcat
gacgaagcagttatggcatatcaaaatggttatgttcatttacatacacgtgttggtatc
gctgttgattcaatgccgaataagccttggacagaagagcaaaaacataaaatcatggtt
acaacagttggtaagattctcttcaacgatatcatgcctgaagatttaccgtacttaatt
gaacctaataatgcaaacttgacagaaaaaactccagataaatacttcttagagccaggt
caggatattcaagcagttattgataacttagagattaatattccctttaagaagaaaaat
cttggtaatattatcgcagaaacttttaaacgtttccgtacaacagaaacttctgctttc
cttgaccgtttgaaggaccttggatattatcattcaacacttgctggtttgactgtgggt
attgctgatatcccagttattgacaataaagctgagattattgatgcagctcaccacaga
gttgaagatatcaataaagccttccgtcgaggtttgatgactgaagaagatcgttatgtt
gctgttacaacaacatggcgtgaagctaaagaagcacttgaaaaacgtcttattgagaca
caagatccaaagaaccctatcgttatgatgatggactcaggagctcgtggtaacatctca
aacttctcacaacttgccggtatgcgtggtttgatggctgctcctaacggacgtatcatg
gaattgccaatcttatcaaacttccgtgaaggtcttagtgttttggaaatgttcttctca
actcacggtgcgcgtaaaggtatgactgatacggcccttaagacagccgactcaggttac
cttactcgtcgtttggttgacgttgcccaagatgttattattcgtgaagatgactgtgga
acagaccgcggtttgacaatcacagcaattacagatggtaaagaggttactgagacactt
gaagagcgtttgataggacgttatactaagaagtcaatcaaacatcctgagacaggtgaa
attctcgttggtgcagataccttaattactgaagatatggctgctaaagttgttaaagcg
ggcgttgaggaagtaactatccgatcagtatttacatgtaacactcgccatggtgtttgt
cgtcactgttacggtattaacttggcaacaggtgatgctgttgaggttggtgaagcagtt
ggtactattgcagctcaatctatcggtgaaccagggacacagcttacaatgcgtaccttc
cataccggtggtgttgcttcaaatactgatattacacaaggtctcccacgtatccaagaa
atctttgaagcacgtaaccctaaaggtgaggcagttattactgaagttaagggtgaagtc
gttgcaattgaagaagactcttcaacacgtactaagaaagtattcgttaaaggtcagaca
ggtgagggagaatacgttgttccatttacagcacgtatgaaagttgaagttggtgatgaa
gtagctcgtggtgcggccttaactgaaggatctatccaaccaaaacgtctccttgaagtt
cgtgatactttatctgttgaaacgtacctacttgctgaagtacaaaaagtttaccgtagc
caaggggtagaaatcggagataaacacgttgaggtaatggttcgtcaaatgctccgtaaa
gttcgtgtcatggatccaggagatacagatcttcttccaggtacacttatggatatttca
gactttacagatgctaacaaagatattgttatttctggtggaatccctgcgacaagccgt
cctgtccttatgggtattactaaggcttcccttgaaactaattcattcttatcagctgca
tccttccaagaaacaacacgtgtccttacagatgctgctatccgtggtaagaaagatcac
ttacttggtcttaaagaaaatgttattatcggtaaaatcattccagcgggtactggtatg
gctcgttaccgtaatattgaaccacttgctgttaatgaagttgagattattgaaggaact
cctgttgatgcagaagttacggaagtatcaacacctacaacagaagattaa
DBGET
integrated database retrieval system
