Streptomyces akebiae: K1J60_04135
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Entry
K1J60_04135 CDS
T08702
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sakb
Streptomyces akebiae
Pathway
sakb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sakb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K1J60_04135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sakb03400
]
K1J60_04135
Enzymes [BR:
sakb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
K1J60_04135
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
K1J60_04135
DNA repair and recombination proteins [BR:
sakb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
K1J60_04135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Ribosomal_S13
NFACT_N
Zn_ribbon_RRN7
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
QYX75810
LinkDB
All DBs
Position
complement(935285..936154)
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AA seq
289 aa
AA seq
DB search
MPELPEVQALRDFLVDRLVGHEVVRVLPVAISVLKTYDPPLSDFEGREVTDVRRHGKFLD
LAADGGELHLVTHLARAGWLQWKDRLPDGPPKPGGKSPLALRVALETGEGFDLTEAGTQK
RLAVHLVRDPAEVPGIARLGPDPLADDFDVTRFAGLLAGERRQIKGALRDQSLIAGIGNA
YSDEILHAAKMSPFKLASSLKPEEIRHLHEALRTTLTDAVERSRGLAAGRLKAEKKSGLR
VHGRTGEPCPVCGDTVREVSFSDSSLQYCPTCQTGGKPLADRRLSRLLK
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattgcctgaagtgcaggctctccgggacttcctggtcgacaggctcgtcggc
catgaggtcgtccgtgtgctgcccgtggccatcagcgtgctgaagacgtacgacccgccc
ctgagcgacttcgagggccgggaggtcaccgacgtacggcggcacgggaagttcctcgac
ctcgcggcggacgggggcgaactgcatctcgtgacgcacctggcgcgcgccggatggctc
cagtggaaggaccggctgccggacggtccgccgaaacccggtggcaagagcccgctcgcg
ttgcgggtcgccctggagaccggagagggcttcgacctcaccgaggccgggacgcagaag
cggctcgcggtccacctcgtgcgggacccggcggaggtgcccggcatcgcccgcctcggc
ccggaccccctcgccgacgacttcgacgtgactcgtttcgccgggctcctcgccggggag
cggcggcagatcaagggtgcgctgcgggaccagagcctgatcgcggggatcgggaacgcg
tacagcgacgagatcctgcacgccgcgaagatgtcgcccttcaagctggcctcctcgctg
aaaccggaggagatccgccacctccacgaagcgctgcgcaccacgctcaccgacgccgtg
gagcgctcccgggggctggcggccgggaggctgaaggcggagaagaagagcgggctgcgg
gtccacggccgtaccggcgagccctgcccggtgtgcggtgacaccgtccgggaggtgtcc
ttcagcgactcctcgctgcagtactgcccgacctgtcagacgggcggcaaacccctcgcc
gaccgacgtctgtcacggttgctcaagtaa
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