Streptomyces akebiae: K1J60_24390
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Entry
K1J60_24390 CDS
T08702
Name
(GenBank) DEAD/DEAH box helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
sakb
Streptomyces akebiae
Pathway
sakb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sakb00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
K1J60_24390
09124 Replication and repair
03420 Nucleotide excision repair
K1J60_24390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sakb03021
]
K1J60_24390
03400 DNA repair and recombination proteins [BR:
sakb03400
]
K1J60_24390
Enzymes [BR:
sakb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1J60_24390
Transcription machinery [BR:
sakb03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
K1J60_24390
DNA repair and recombination proteins [BR:
sakb03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
K1J60_24390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
ETAA1
AAA_22
IMD
YflT
Motif
Other DBs
NCBI-ProteinID:
QYX79239
LinkDB
All DBs
Position
complement(5641700..5643358)
Genome browser
AA seq
552 aa
AA seq
DB search
MSRVNGPGPLIVQSDKTLLLEVDHEQADECRRAIAPFAELERAPEHIHTYRVTPLGLWNA
RAAGHDAEQVVDALVQYSRYPVPHALLVDVAETMDRYGRLTLSKHPTHGLVLTTTDRPVL
EEILRSKKVTPLIGARIDPDTVAVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHPIELA
EDGWALRPYQKQAVENFWHGGSGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQ
WKHELVKRTSLTEEEIGEYSGTRKEIRPVTIATYQVLTTRRKGVYPHLELFDSRDWGLIV
YDEVHLLPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQG
YIAPADCVEVRVNLTDSERLAYATAEQEEKYRFCSTTATKRKVAEAIVRRFAGQQILVIG
QYIDQLDELGAHLDAPVIKGETSNAQREKLFEAFRQGEINVLVVSKVANFSIDLPEATVA
IQVSGTFGSRQEEAQRLGRVLRPKADGHKAHFYSVVARDTIDQDFAAHRQRFLAEQGYAY
RIMDADELLAEG
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
gtgtcacgcgtgaacggtcccggtcccctcatcgtccagtccgacaaaacgctgctcctg
gaggtcgaccacgagcaggcggacgagtgccgtcgggccatcgcgcccttcgccgagctg
gagcgggcgccggagcacatccacacctaccgggtgacgccgctcggactgtggaacgcg
cgcgccgccggccacgacgccgagcaggtcgtcgacgcgctggtgcagtacagccgctac
ccggtgccgcacgcgctgctcgtggacgtcgccgagacgatggaccgctacggccgcctc
acgctctccaagcacccgacccacggtctcgtcctgaccaccaccgaccggccggtgctg
gaggagatcctgcggtcgaagaaggtcactccgctcatcggggcgcggatcgaccccgac
accgtcgccgtgcacccctccgagcgcgggcagatcaagcagaccctgctgaagctgggc
tggcccgccgaggacctcgccgggtacgtggacggcgaggcgcacccgatcgagctggcc
gaggacggctgggcgctgcgtccctaccagaagcaggcggtggagaacttctggcacggc
ggcagcggggtcgtcgtactgccctgcggtgccggaaagaccctcgtcggcgccgggtcc
atggcccaggccaagtcgaccaccctcatcctcgtcaccaacaccgtctccgcgcggcag
tggaagcacgagctggtgaagcggacgtcgctgaccgaggaggagatcggcgagtacagc
gggacgcgcaaggagatccgccccgtcaccatcgccacctatcaggtgctgacgacccgg
cggaagggcgtctacccgcacctggagctcttcgactcccgtgactggggcctcatcgtc
tacgacgaggtgcacctgctgcccgcgccggtcttcaagttcaccgccgatctccaggcg
cgtcggcggctggggttgacggcgacgctcgtccgggaggacgggcgcgagtcggacgtg
ttctccctcatcgggcccaagcggttcgacgcgccctggaaggagatcgaggcgcagggc
tacatcgcgcccgccgactgcgtcgaggtccgggtgaacctgaccgactccgagcggctc
gcctacgccaccgccgagcaggaggagaagtaccgcttctgttccaccaccgcgaccaag
cggaaggtggccgaggcgatcgtccgccgcttcgcgggtcagcagatcctcgtcatcggg
cagtacatcgaccagctcgacgaactgggcgcccatctggacgcgccggtgatcaagggc
gagaccagcaacgcccagcgcgagaagctcttcgaagcgttccggcagggcgagatcaac
gtcctggtggtgtcgaaggtcgcgaacttctccatcgacctgccggaggccacggtggcc
atccaggtctccggcaccttcggctcccgccaggaggaggcccagcgcctcggccgcgtc
ctgcgtcccaaggccgacggccacaaggcccacttctactccgtggtcgcccgcgacacc
atcgaccaggacttcgccgcccaccgccagcgcttcctcgccgaacagggctacgcctac
cggatcatggacgcggacgagctcctggcggagggctga
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