Streptomyces akebiae: K1J60_26165
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Entry
K1J60_26165 CDS
T08702
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sakb
Streptomyces akebiae
Pathway
sakb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sakb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K1J60_26165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sakb03400
]
K1J60_26165 (mfd)
Enzymes [BR:
sakb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K1J60_26165 (mfd)
DNA repair and recombination proteins [BR:
sakb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K1J60_26165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
MFD_D3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QYX79535
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All DBs
Position
6055689..6059222
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDAPLAEAIRAASDGHRTHIDLVGPPAARPFAVAALARDAGRPVLAVTA
TGREAEDLAAALRSLLPPDGVAEYPAWETLPHERLSPRSDTVGRRLAVLRRLTHPRPDDP
ETGPVSVVVAPIRSVLQPQVKGLGDLEPVALRTGETADLNRTVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARDLAERHPELGELLGRIAEGIAVEGMESLAPVLVDDMELLIDVLPKGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEELDADTLKLGMHAPESYRGDIAKALADTKGWLADGWRTVFVTEAHGPAA
RTVEVLGGEGVAARLEAELGEISPSVVHVACGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQTDTEAKG
TLEGLREGAVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGG
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASVNTEADIASVREELVDRYGKL
PEPVENLLLVAGLRMLARACGVGEVVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAA
HQVLVPRPKTAKVGGKPLVGRDLLGWTGEFLASILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctccacggtctgctagacgccgtagtcaaggacgcccccctcgcggaagcgatc
agggcggcgtccgacggccaccgcacccacatcgacctggtgggccccccggcggcccgc
cccttcgccgtggccgccctcgcccgcgacgccggccggcccgtactcgccgtgacggcg
acgggccgcgaggccgaggacctggcggcggccctgcgctccctgctgcccccggacggc
gtcgcggagtacccggcctgggagaccctgccgcacgagcgcctcagcccgcgcagtgac
accgtcggccgccgcctcgccgtcctgcgccgcctgacccacccccgccccgacgacccg
gagaccggcccggtgtcggtggtggtagccccgatccgttcggtgctccagccgcaggtc
aagggcctcggagacctggagccggtcgccctgcgcaccggcgagacggccgatctgaac
cgtacggtcgaggcgctggcggcagccgcgtactcccgggtcgagctggtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctggacgtcttcccgcccaccgaggagcacccc
ctgcgggtggagttctggggtgacgacgtcgaggagatccggtacttcaaggtcgccgac
cagagatcgctggaggtggccgagcacggcctgtgggccccgccctgccgtgagctcctc
ctcacggacgacgtgcgcgcccgcgcccgcgacctcgccgaacgccaccccgagctgggt
gaactcctgggcaggatcgccgagggcatcgccgtcgaggggatggagtcgctcgccccg
gtcctcgtcgacgacatggagctgctgatcgacgtcctgccgaagggctcgatggcggtc
gtgtgcgacccggagcgggtgcgcacgcgcgcggcggacctggtggccacctcgcaggag
ttcctccaggcgtcctgggcggccacggccggcggcggcgaggcgcccatcgacgtcgga
gcggcctccctgtggtccatcgcggacgtccgcgaccgggcccgtgagctggacatgatg
tggtggtcggtgtcgccgttcgccgccgacgaagagctcgacgcggacaccctgaagctc
ggcatgcacgccccggagagctatcgcggcgacatcgcgaaggcgctcgccgacaccaag
ggctggctggccgacggctggcgcacggtgttcgtgaccgaggcccacggcccggccgcc
cgcacggtggaggtgctcggcggcgagggcgtcgcggcccggctggaggcagagctgggg
gagatctccccgtcggtcgtgcacgtggcgtgcggctcgatcgactacggcttcgtcgac
cccgccctcaagctcgcggtgctcaccgagaccgacctgtcgggccagaaggcggccggc
aaggacggcgcccggatgcccgcccgccgccgcaagaccatcgacccgctcaccctggag
gcgggcgactacatcgtccacgagcagcacggtgtcggccgctacatcgagatggtccag
cggaccgtgcagggcgcgacccgcgagtacctggtcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccgcctgtacatccccaccgaccagctggagcagatcaccaagtac
gtcggtggcgaggcgcccaccctgcaccgcctcggcggagccgactggacgaagaccaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctgtactccgcc
cggatggcggcgcccggtcacgcgttcggcgcggacacgccctggcagcgggagctggag
gacgccttcccgtacgccgagactcccgaccagctgacgacgatcgccgaggtcaaggag
gacatggagaagacggtcccgatggaccgtctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtgcgggccgccttcaaggccgtccaggacggcaagcaggtggcggtg
ctggtgcccacgaccctgctggtgcagcagcacttcggcacgttcagcgagcggtactcg
cagttcccggtgaacgtccgggcgctgtcccgcttccagacggacaccgaggccaagggc
accctggagggcctgcgcgagggcgcggtcgacatcgtcatcggcacccaccggctgttc
tcctccgagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtggacgtgctgacgatg
tccgcgacgccgatcccgcgcacgctggagatggcggtcacgggcatccgcgagatgtcg
acgatcacgacacctccggaggagcgccacccggtcctgaccttcgtcggcccgtacgag
gagaagcagatcggcgcggcgatccgccgtgaactcctgcgcgagggccaggtcttctac
atccacaaccgggtggagtccatcgaccgggcggcggcccggctgcgggagatcgtcccc
gaggcgcggatcgcgaccgcccacggccagatgtcggagcaggccctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtcctcgtctccacgacgatcgtggagtccggc
atcgacatctccaacgcgaacacgctgatcgtggagcgtggggacaccttcggcctgtcg
cagctgcaccagctgaggggccgggtcggccggggccgggagcgcggttacgcgtacttc
ctctacccgccggagaagcccctgaccgagacggcccacgagcgcctggcgaccatcgcc
cagcacacggagatgggcgccggcatgtacgtggcgatgaaggacctggagatccggggc
gcgggcaatctgctgggcggcgagcagtccggccacatcgcgggcgtcggcttcgacctg
tacgtgcggatggtcggcgaggccgtcgcggactaccggcgtcagctggagaccgggggg
atcgaggaggagccgccgctcgaggtgaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctgaggctgcaggcctaccgggccatcgcctccgtg
aacaccgaggccgacatcgcctccgtgcgcgaggaactcgtcgaccgctacggcaagttg
cccgagccggtggagaacctgttgctggtggccgggctgcgcatgctggcccgcgcctgc
ggcgtcggcgaggtcgtcctccagggcaccaacatccgcttcgcgccggtggagttgcgg
gagtcgcaggagctgcgcctgaagcggctgtacccgggcaccgtcatcaagccggccgcg
caccaggtgctggtgccgcgcccgaagacggcgaaggtgggcggcaagccgctggtcggg
cgggatctgctggggtggaccggggagttcctggcttcgatcctggggtcgtga
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