Streptomyces akebiae: K1J60_29250
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Entry
K1J60_29250 CDS
T08702
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sakb
Streptomyces akebiae
Pathway
sakb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sakb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1J60_29250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sakb03019
]
K1J60_29250
03009 Ribosome biogenesis [BR:
sakb03009
]
K1J60_29250
Enzymes [BR:
sakb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
K1J60_29250
Messenger RNA biogenesis [BR:
sakb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K1J60_29250
Ribosome biogenesis [BR:
sakb03009
]
Prokaryotic type
rRNA processing factors
K1J60_29250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
QYX80065
LinkDB
All DBs
Position
6781785..6785957
Genome browser
AA seq
1390 aa
AA seq
DB search
MPESIEPAEPAQGSEHNTPSDTLPPRRRRRAASRPAGPPSAASEAAAETTAPAVQAAESE
DLAAIEPTEAHETTETVEDDVTVEDAQVTEAEETKAETPAAEEAAPAGRTRRRATRRASA
PAGAPKDAEVVEVVETVAPVASPESAAEMPVAVEEEAPAGRTRRRATRRATAPTSAPKAA
EEKSAETATVAEPEAAAVAEAPAAVEEAAPAGRTRRRATRRASAPAGEAKAAEIVEAPAE
ATETAPAEIQESAPVEAAAEEAAPRRTRRRATRRVAAPADASEGEAAAERADESVAAETA
SAAAEQVPAAEATSPEPVKAPQAAAEAEAEDGGPRRPRRRATRKAAVGFSAPAPPKAEDA
PSRPSRPAVAVFQAPVFTEPMFQTPERAAAQAAAEAEAETVTVEPAETLESAEPIGLGGF
AEEEPTGGSRRRRRRRGEPAEADQPAAVAVVADEPEEPEESEEPEESEETGEDSAENDEY
GEEESTGSRRRRRRGGRRRRRGESAEAEDAAEGDELTAEQAAQDAEDTAEQLDEDAEDEG
DEREESGSGSSSSRRRRRRRRRAGDSGSEGEATDDPERTVVKVREPRERRAKDTEPSDEV
QSIKGSTRLEAKKQRRREGREQGRRRVPIITEAEFLARREAVERVMVVRQSGERTQIGVL
EDSVLVEHYVNKEQSTSYVGNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEVNFEALG
MANGPRRIESALKSGQSVLVQVTKDPIGHKGARLTSQVSLPGRYLVYVPEGSMTGISRKL
PDTERARLKTILKKIVPEDAGVIVRTAAEGASEDELRRDVERLQGQWEDIQKKAKNGNAP
TLLYGEPDMTVRVVRDIFNEDFSKVIVSGEDAWETIHGYVSNVAPDLAERLQKWTSEVDV
FATYRIDEQLMKALDRKVWLPSGGSLVIDKTEAMIVVDVNTGKFTGQGGNLEETVTRNNL
EAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRDLVLRRLLECLGRDRTKHQVAEVTSLGL
VQMTRKRVGQGLLESFSETCVHCNGRGVIVHMDQPTAVGGGGKRRKRGRGGAEHDHEHVS
VPEAVEPAESAELVEAEVAAEVAEPVALPAPEFEPDEELYSSVAEAEAAVGRGRSRRRAT
RRASAPSGAPKSREAVAVTTVSEDRAPKSREAAEAEPVAVEDPVVEMPAAVPSTEEAAPK
GRTRRRATRKVSAPAGAPAGAVADDAVVTVEPAPEPVAEPTPEPVVEEPVAEEAAQPEAA
AVAESAAPARPRRRAVRKATAPTASEEAAVVVVPSAPAEDVAEAPVEESAPAAEETEPEA
GAPAKKAAARKTAKKATAKKAATKKTAAAKKTVAKKATAKKAATKKSATKKTTVAAEQSS
ATVTASTDED
NT seq
4173 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaatcgatcgaacccgccgagcccgcgcagggctccgaacacaacacgccgagc
gacaccctgccgccgcgccgtcgccgccgtgccgcgtcccgccccgcgggaccgccgtcc
gccgcctccgaagcggccgcggagaccaccgcgccggccgtacaggccgccgagtccgag
gacctcgcggccatcgagccgaccgaggcgcacgagaccaccgagaccgtcgaggacgac
gtgaccgttgaggacgcgcaggtcaccgaggccgaggagacgaaggccgagacccccgcc
gccgaggaggccgcgcccgccgggcgtacgcgccgtcgtgcgacccgccgcgcctccgcc
cccgccggcgcgcccaaggacgccgaggtcgtcgaggtcgtcgagaccgtggcgccggtc
gcctcccccgagagcgccgccgagatgcccgtcgcggtcgaggaagaagcgcccgccggg
cgtacgcgccgtcgtgcgacccgccgcgccaccgcccccacgagcgcgcccaaggccgcc
gaggagaagtccgccgagacggcgacggtggccgagcccgaggccgccgccgttgccgag
gcgcccgccgccgtcgaggaggccgcgcccgccgggcgtacgcgccgtcgggccacgcgc
cgggcgtccgcgcccgccggcgaggcgaaggccgccgagatcgtggaggctccggcggag
gccacggagaccgcacccgccgagattcaggagagcgcgccggtcgaggcggcggccgag
gaggccgcgccccgtcgtacccgtcggcgtgccacgcgccgagtcgccgcgcccgccgac
gcgtccgagggcgaggccgccgccgagcgcgcggacgagtccgtggccgccgagaccgcg
tcggctgcggccgagcaggtgcccgccgccgaggccacctcccccgagccggtcaaggca
ccgcaggcggctgccgaggccgaggccgaggacggtggcccgcgtcggccccgtcgtcgg
gccacgcgcaaggccgccgtgggattctccgcgcccgccccgccgaaggcggaggacgcg
ccgtcgcgtccgtcgcggcccgccgtggccgtgttccaggcgcccgtgttcaccgagccg
atgttccagacgccggagcgcgccgccgcgcaggccgccgccgaggcggaggccgagacc
gtgacggtcgagccggccgagaccctcgagagcgccgagcccatcggcctcggcgggttc
gccgaggaggagccgaccggcgggtcgcggcgtcgccgtcgtcgccggggtgagcccgcc
gaggccgatcagcccgcggccgtcgccgtggtcgccgacgagccggaggagcccgaggag
tccgaggagccggaagagtccgaggagaccggcgaggactccgccgagaacgacgagtac
ggcgaggaggagtccaccgggtcgcggcgccgccgtcgccggggtggccgccgtcgtcgc
cggggcgagtcggccgaggccgaggacgccgccgagggcgacgaactcaccgccgagcag
gccgcgcaggacgccgaggacaccgccgagcagttggacgaggacgccgaggacgagggc
gacgagcgcgaggagtccggttcgggctccagcagcagccgtcggcgtcgccgccgtcgt
cgtcgcgccggtgactccggctccgagggcgaggcgaccgacgaccccgagcgcacggtc
gtcaaggtccgtgagccgcgcgagcggcgcgccaaggacaccgagccgtccgacgaggtg
cagtcgatcaagggctccacccggctggaggccaagaagcagcgccgtcgggaaggccgt
gagcaggggcgccgtcgcgtcccgatcatcaccgaggccgagttcctcgcccgccgcgag
gccgtcgagcgcgtcatggtcgtccgccagagcggcgagcgcacccagatcggcgtcctg
gaagacagcgtgctcgtcgagcactacgtcaacaaggagcagtcgacctcgtacgtcggc
aacgtctacctcggcaaggtgcagaacgtgctgccgtcgatggaggccgccttcatcgac
atcggcaaggggcgcaacgccgtcctgtacgccggtgaggtcaacttcgaggcgctcggc
atggccaacgggccgcgccggatcgagtccgccctgaagtccgggcagtccgtgctcgtc
caggtcaccaaggatccgatcggacacaagggcgcccgtctgaccagccaggtctccctg
ccgggccgctacctggtctacgtccccgaggggtcgatgaccggtatcagccgcaagctg
cccgacaccgagcgggcgcggctgaagaccatcctcaagaagatcgtccccgaggacgcg
ggcgtcatcgtgcgcaccgccgccgagggcgcgagcgaggacgagctgcgccgcgatgtc
gagcggctgcaggggcagtgggaggacatccagaagaaggccaagaacggcaacgcgccg
acgctgctgtacggcgagccggacatgaccgtccgggtcgtccgcgacatcttcaacgag
gacttctccaaggtcatcgtgagcggcgaggacgcctgggagaccatccacgggtatgtc
tcgaacgtcgcgcccgacctggcggagcgtctgcagaagtggacctccgaggtcgacgtc
ttcgcgacgtaccgcatcgacgagcagctgatgaaggcgctggaccgcaaggtgtggctg
cccagcggtggttcgctggtgatcgacaagaccgaggccatgatcgtggtcgacgtcaac
accggcaagttcaccggccagggcggcaacctggaggagacggtcaccaggaacaacctg
gaggcggccgaggagatcgtgcgtcagctgcggctgcgcgacctcggcggcatcgtcgtc
atcgacttcatcgacatggtcctggagtccaaccgggacctggtgctgcggcgcctgctg
gagtgcctgggacgcgaccgtacgaagcaccaggtcgccgaggtcacctcgctgggcctg
gtgcagatgacccggaagagggtcggccagggtctgctggagtccttctccgagacctgt
gtccactgcaacgggcgtggcgtgatcgtgcacatggaccagccgacggccgtcggcggt
ggtggcaagcgccgtaagcgcgggcgtggcggtgccgagcacgaccacgagcacgtgtcc
gtccccgaggccgtcgagccggcggagtcggccgaactggtcgaggccgaggtggccgcc
gaggtcgccgagcccgtggcgctgcccgccccggagttcgagccggacgaggagctgtac
agcagcgtcgccgaggccgaggcggcggtcgggcgcggccgttcgcgtcgtcgggcgacc
cggcgggcgtccgcgccctccggcgccccgaagtcccgtgaggccgtggccgtcaccacc
gtctccgaggaccgtgccccgaagtcgcgggaggccgccgaggcggagccggtcgcggtg
gaggacccggtcgtcgagatgccggccgccgtgccgagcaccgaggaggccgcccccaag
ggccgtacgcgtcgtcgggcgacccggaaggtgtccgcccccgcgggcgcgccggccggg
gctgtggcggacgacgccgtggtcacggtcgagccggccccggagccggtggccgagccg
accccggagcccgtggtcgaggagcccgtggccgaggaggccgcgcagcccgaggcggcg
gccgtcgccgagagtgcggctccggcccgtccgcgtcggcgtgccgtgcgcaaggcgacc
gcgcccaccgcgtccgaggaggcggccgtggtcgtggtcccgtcggctccggccgaggac
gtggccgaggccccggtcgaggagtccgctccggccgccgaggagaccgagcccgaggcc
ggggcaccggccaagaaggcggcggcccgcaagacggccaagaaggccacggcgaagaag
gccgccacgaagaagacggcggctgccaagaagacggtcgcgaagaaggccacggccaag
aaggcggccacgaagaagtcggccacgaagaagaccaccgtggccgccgagcagtcctcg
gccacggtcacggcttcgaccgacgaggactga
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