Streptomyces akebiae: K1J60_33760
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Entry
K1J60_33760 CDS
T08702
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sakb
Streptomyces akebiae
Brite
KEGG Orthology (KO) [BR:
sakb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sakb03019
]
K1J60_33760 (hrpB)
Enzymes [BR:
sakb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K1J60_33760 (hrpB)
Messenger RNA biogenesis [BR:
sakb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K1J60_33760 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
AAA_19
AAA_25
AAA_30
AAA_22
nSTAND3
Helicase_RecD
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QYX80842
LinkDB
All DBs
Position
complement(7806184..7808772)
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AA seq
862 aa
AA seq
DB search
MIRYDALDALPVRAALPSLAEALEGHGTAVLVAPPGTGKTTLVPLALAGLSDGGPARRVV
VAEPRRIAARAAARRMAWLLGEKVGESVGHTVRGERVVGPRTRVEVVTTGVLLQRLQRDQ
ELPGVDVVVLDECHERHLDADTVAAFLLDVRAALRPELRLVAASATTDAEGWARLLGGAP
VVAAEGVSYPVEVVWAPPARPVRPPHGMRVDPAALTHVASVVRRALTEREGDVLCFLPGV
GEIARVAGQLGGLGDVDVLQVHGRAPAAVQDAVLAGGERRRVVLATSVAESSLTVPGVRV
VVDSGLAREPRVDHARGIGSLTTVRASRAAGRQRAGRAGREAPGTVYRCWAEAEDARLPR
FPSPEIKVADLTAFALQAACWGDPEATGLALLDPPPGGAMAAARNVLSAIGAVSPTGHAT
ERGVRMSRLGLHPRLARALLDATPLVGAECAAEVVALLSEEPPREYGDDLAAALRRARHG
GDAYAARWRTEVRRLRTASPSASQTGTQTGPQTGTPSHPAPAQDSRTGEAQAGGWAAAGG
DRGVGVVAALAFPERVARGEGGAFLMVSGTRAEVAEGSGLRGVPWISVAVADRAVGSGHA
RVRLGVAVDEGVAREAAGELYRRDEEVAWRDGDVVARRVERLGAVELAVRPLREAAPALV
RQALLEGLRDEGFGLLRWSQDAARLRERLAFLRERLGEPWPDVSDGALHARVEEWLEPEV
SRARRRADLGRIDAGEGLKRLLPWATGDAARLDELAPERIEVPSGSRIRVDYSRPEQPVL
AVKLQEMFGLRESPVLAGVPVLVHLLSPAGRPAAVTADLASFWRDGYRAVRAELRGRYPR
HPWPEDPATAEPTRYTNARLRR
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgttacgacgccctggacgcgctgcccgtgcgcgctgccctgccttcgttggcc
gaggccctggaagggcacggcaccgcggtcctcgtggcgccgcccggcaccggcaagacg
acgctggtgcccctggccctcgcggggctgtcggacggcgggccggcgcgtcgggtggtc
gtcgccgagcctcggcggatcgcggcgcgggcggcggcccgccggatggcgtggctgctg
ggcgagaaggtgggcgagagcgtcggccacaccgtgcgcggcgagcgggtggtggggccg
cgcacgcgcgtggaggtcgtcaccaccggcgtgctgctgcaacggttgcagcgggaccag
gagctgcccggggtcgacgtcgtcgtgctcgacgagtgccatgaacggcatctggacgcg
gacacggtcgcggcgttcctgctcgacgtcagggcggcgctgcggcccgagctgcggctg
gtggcggcgtcggcgacgaccgacgccgagggctgggcgcggctgttgggcggggcgccg
gtggtggcggccgagggggtgtcgtatccggtcgaggtggtgtgggcgccgccggcccgt
ccggtacggccgccgcacgggatgcgggtggacccggcggcgctgacgcatgtcgcgtcg
gtggtgcggcgggcgctgaccgaacgggagggcgacgtcctgtgcttcctgccgggggtg
ggcgagatcgcgcgcgtggcgggacaactgggcgggctcggtgacgtggacgtgctccag
gtgcacgggcgggcgccggcggcggtgcaggacgcggtgctggcgggcggggagcggcgg
cgggtggtgctggcgacgtcggtggccgagtcctcgctgacggtgcccggggtgcgggtg
gtcgtcgactccgggctcgcgcgcgagccgcgggtcgaccacgcgcggggcatcggctcg
ctgacgacggtccgggcctcgcgggcggccggacggcaacgggccgggcgggcggggcgc
gaggccccgggcaccgtctaccggtgctgggcggaggccgaggacgcccgcctgccacgc
ttcccctcgccggagatcaaggtggccgacctgacggcgttcgcgttgcaggcggcgtgc
tggggcgacccggaggccaccgggctggcgttgctggatccgccgcccggtggggcgatg
gcggcagcccggaacgtcctctccgcgatcggtgccgtctcccccacggggcacgccacg
gaacgcggtgtccgtatgtcccggctcgggctccacccacggctggcccgcgccctcctc
gacgcgacgccgctggtgggagccgagtgcgcggccgaggtggtcgcgctgctgagcgag
gagccgccgcgggagtacggcgacgacctggccgccgcgctgcgccgcgcccggcacggg
ggtgacgcctacgcggctcgctggcgcaccgaggtccggcggctgcggaccgcgtccccg
tccgcgtctcagaccgggactcagaccgggcctcagaccgggactccttcccatcccgcc
ccggcccaggactcccgaacgggtgaggcgcaggcgggtgggtgggcggctgccgggggc
gatcgcggggtcggggtggtggcggctctggcgttcccggagagggtggcccggggggag
ggcggggcgtttctgatggtgtccgggacccgggccgaggtggcggaggggtccggattg
cgaggggtgccctggatctccgtggctgtggccgaccgggcggtggggagcgggcacgcg
cgcgtgcggctcggggtcgcggtcgacgagggggtcgcccgggaggcggccggggagctg
taccgccgggacgaggaggtcgcgtggcgggacggggacgtcgtggcacggcgggtggag
cggctgggggccgtggagttggcggtgcggccgttgcgggaggcggcgcccgcacttgtt
cggcaggcgttgctggaagggctgcgggacgaggggttcgggctgttgcggtggtcccag
gacgcggcgcggttgcgggagcggctggcgttcttgcgggagcggctgggtgaaccgtgg
cccgatgtgtccgacggcgccctgcacgcgcgcgtggaggagtggttggagcccgaggtg
agccgggcccgacggcgggccgacctcgggcggatcgatgccggggaggggctgaagcgg
ctgctgccgtgggccacgggggacgccgcacggctggacgagctggcgcccgagcggatc
gaggtaccgagcgggtcgcggatccgggtcgactactcccggcccgaacagccggtgctg
gcggtgaagctgcaggagatgttcgggctgcgggagtcgccggtactggccggggtgccc
gtgctggtgcatctgctgtcccccgccgggcggcccgccgccgtcaccgccgatctcgcc
tcgttctggcgggacgggtaccgggccgtacgggcggagttgcggggccggtatcccagg
catccgtggccggaggacccggcgacggccgagcccacccggtacaccaacgcgcggctc
aggcgttga
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