Sphingopyxis alaskensis: Sala_0516
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Entry
Sala_0516 CDS
T00361
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sal
Sphingopyxis alaskensis
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sal03019
]
Sala_0516
Enzymes [BR:
sal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Sala_0516
Messenger RNA biogenesis [BR:
sal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Sala_0516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Cas3-like_C_2
Tnp_DNA_bind
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABF52237
UniProt:
Q1GVT5
LinkDB
All DBs
Position
532864..535332
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AA seq
822 aa
AA seq
DB search
MTQLPLPIDAVLPDIMAALVLKPNAVVVAPPGAGKTTRVAPAILDQPWCKGAVWLLSPRR
LAARGAAERISEEMGEAVGGAVGYATRLDSKQSATTRLLVMTPGLFRNRILADPELRGVS
AVLFDEVHERSLDGDFALALAIDAQQGLRDDLRLVAMSATLDGARFGALLGDAPVVKSEG
KIFPLDLRHIGRRAEDRLEASVLAAVRQAMADEADGDMLAFLPGAADIERAANAVDEARL
PLAVHRLHGQIDPALQRKALVRDPEGRRKLILATSIAETSLTIDGVRIVIDAGLSRRPRF
DKAAGISRLVTERASQASATQRAGRAARQGPGAAYRLWEAAATAGMPPFDPPEIHESDLM
PVVLDCASWGIIDPRQLGWLDPPSPAAVAEAKTRLQAIGALGEDGRITAHGKALAAIPLP
VPLAHMLLDAARAGEGELAGRLAVLLTEPGLGGRGVDVEARLARWRAQRDERSGGAFRLA
RRLSGIAEKLAAGAGEAAPRSLGGWIATAWPDRVARRRAGQRGEYLSVGGRAYRLDPVDP
LAGSEWLAIADAQGHAAGVRILAAAAIDAVEVETLFADHIVVHSASRYDSANDRVDHRRE
RRLGAIALTSGPAPRGDTAADDIAVRMAAVRDKGLGLIGWGPAAQALRQRASFAGLDALS
TNALGDNLEIWLEPLLADCRGLRDIGDRRLADALMAMLDWPARQLLERHAPADYVTPAGS
RHPIDYGADGGPTVSVRVQEMFGQSRHPVVGDPPVPLILALTSPAHRPIQTTRDLASFWA
GSWHDVAREMRGRYPKHSWPDDPAGARPTLMTKAAQARREGQ
NT seq
2469 nt
NT seq
+upstream
nt +downstream
nt
atgactcagctgccgctgccgatcgacgccgtgctgcccgacatcatggcggcgctggtg
ctgaagcccaatgccgtcgtagtggcgccgccgggcgcggggaagaccacgcgcgtcgcg
ccggcgatcctcgatcagccctggtgcaagggggcggtatggctgctctcgccgcggcgg
ctcgcggcgcgcggtgcggccgaacgcatatcggaggagatgggcgaggcggtcggcggc
gcggttggctatgcgacgcggctcgacagcaagcagtcggcgacgacgcggctgctggtg
atgacccccggcctgttccgcaaccgcatccttgccgatcccgaacttcgcggcgtgtcg
gcggtgctgttcgacgaagtccacgagcgcagccttgacggcgatttcgcgctcgcgctg
gcaatcgacgcgcagcaggggctgcgcgacgatctgcgcctcgtcgccatgtcggcgacg
ctcgacggcgcgcggttcggcgcgctgctcggcgatgcgccggtggtgaagagcgaaggc
aagatttttccgctcgatctccgccacatcggccgccgcgccgaggatcggctcgaagcg
tcggtgctggcggcggtgcggcaggcgatggcggacgaggcagacggcgacatgctcgcc
ttcctgcccggcgccgctgacatcgagcgcgcggcgaacgcagtggacgaggcacgcctg
ccgctcgctgtccaccggctgcacggacagatcgaccccgcgctccagcgaaaggcgctc
gtccgcgatcccgaggggcggcgcaagctgatcctcgcgacgagcatcgccgaaaccagc
ctgacgatcgacggcgtgcgtatcgtcatcgacgctggcctctcgcgccgcccgcgcttc
gacaaggccgcggggatatcgcgcctcgtcaccgaacgcgcgagtcaggcgtcggcgacg
cagcgcgcggggcgcgcggcgcggcaggggccaggggcggcttatcgcttgtgggaagcc
gcggcgaccgcgggaatgccgcccttcgacccgcccgaaatccacgagagcgacctgatg
cccgtcgtgctcgactgcgcgagctggggcatcattgacccgcgccaattgggctggctc
gatcctccgtcgcctgccgcggtggccgaagcgaagacgcggctgcaagcgatcggggcg
ctcggcgaagacgggcggatcaccgcgcatggcaaggcgctcgccgcgatcccgctgccc
gtgccgctcgcgcacatgctgctcgacgcggcgcgcgcgggggaaggcgagttggcgggg
cgcctggcggtgctgctcaccgaaccggggctcggagggcgcggcgtcgatgtcgaggcg
cggctggcgcgctggcgcgcgcagcgcgacgagcggtccggaggggcgtttcgcctcgca
cggcggctttcgggcatcgcggaaaagctggcggcgggggcaggcgaagccgcgccgcgc
tcgctcggcggctggatagcgaccgcctggcccgatcgcgtggcgcgtcggcgcgcgggt
cagcgcggtgagtatctgagcgtcggagggcgggcctatcgtctcgatccggtcgatccg
ctggccgggagcgaatggctggcaatcgccgatgcgcagggacacgccgcgggcgtgcgc
atcctcgccgccgcggcgattgatgcggtcgaggtcgaaaccttgttcgcggaccatatc
gtcgtccattcggcaagccgctacgacagcgcgaacgaccgcgtcgatcaccggcgcgag
cggcggctcggcgcgattgcgctgacgagcggaccggcgccgcgcggggacacggccgca
gacgatatcgcggtgcgcatggcggcggtgcgcgacaagggtctgggtcttatcggctgg
ggtccggcggcgcaggcactgcgccaacgcgcctcctttgcggggctcgacgcgctgtcg
accaatgcgcttggcgacaacctcgaaatctggctcgagcccttgctcgccgactgccgc
gggttgcgcgacatcggcgaccgcaggctcgccgatgcgctgatggcgatgctcgactgg
ccggcgcgacagttgctcgaaagacatgcgcccgccgattacgtgaccccggcgggcagt
cggcatccgatcgactatggcgccgacggcggcccgacggtcagcgtccgggtgcaggag
atgttcggccagtcgcgtcacccggtcgtcggcgatccgccggtgccgctgatcctcgcg
ctgacgtcgcccgcgcatcggccgatccagacgacgcgcgatctggcgtccttctgggcg
ggcagctggcacgatgtcgcgcgcgaaatgcgcggccgttatccaaagcatagctggcca
gacgatcccgcaggcgcccgtccgacgctgatgaccaaggcggcgcaggcgcggcgcgag
ggtcaatag
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