Sphingopyxis alaskensis: Sala_0565
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Entry
Sala_0565 CDS
T00361
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sal
Sphingopyxis alaskensis
Pathway
sal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sala_0565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sal03021
]
Sala_0565
03400 DNA repair and recombination proteins [BR:
sal03400
]
Sala_0565
Enzymes [BR:
sal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sala_0565
Transcription machinery [BR:
sal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sala_0565
DNA repair and recombination proteins [BR:
sal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sala_0565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF211
IDH
TmoB
Motif
Other DBs
NCBI-ProteinID:
ABF52286
UniProt:
Q1GVN6
LinkDB
All DBs
Position
complement(578579..579637)
Genome browser
AA seq
352 aa
AA seq
DB search
MTVNIRNWQELKKPSNLEIKTGGDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMEGEGPKRLQLSATGPATVKAGDI
MVSGDIKVMNPNHVICHLDEGATLNMELVADTGKGYVPATANRPADAPIGLIPVDSLYSP
VRQVAYKVDNARIGQELDYDKLNLTVETDGTVTPEDAVAYAARILQDQLQVFVHFEEAMS
DSGLIGMAAPSAASDESDVNQLNRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaacatccggaactggcaggaattgaagaagcccagcaacctggaaatcaag
accggcggcgacggcaagcgcaaggcgaccttcgttgccgaaccgctcgagcgcggtttc
ggcctgacgctgggtaacgcgctgcgccgcgtgctgctctcgtcgctccagggcgcggcg
atcacctcgatcaagatcgaaaatgtgctgcacgagttttcgagccttgccggtgtgcgc
gaagacgtcaccgacatcgtcctgaacgtcaagcagatcgcgctcaagatggagggcgaa
gggccgaagcggctccagctttcggcgacgggcccggcgacggtcaaggcgggcgacatc
atggtgtcgggcgacatcaaggtgatgaacccgaaccatgtcatctgccatctcgacgaa
ggcgcgacgctcaacatggagctcgtcgccgacaccggcaaaggctatgtccccgcgacc
gccaaccgcccggccgatgcgccgatcggcctgatcccggtcgactcgctctattcgccg
gtgcgccaggtcgcctacaaggtcgacaatgcccgcatcgggcaggaactggactatgac
aagctgaacctgaccgtcgaaaccgacggcacggtgacgcccgaagatgctgtcgcttac
gccgcacgcatcctgcaggatcagctccaggtcttcgtccacttcgaagaagcgatgagc
gacagcggcctgatcggcatggcggccccctcggccgccagcgacgagtccgacgtcaac
cagctcaaccgcttcctgctcaagaaggtcgacgagcttgaactgtcggtccgctcggcc
aactgcctgaagaacgacaacatcatctatatcggtgacctcgttcaaaagaccgaagcc
gaaatgctccgcacgccgaacttcggccgcaagtccttgaacgaaatcaaggaagtgctg
tcgtcgatgggcctgcgtctgggcatggacatccccggctggccacccgagaatatcgag
gaaatggccaagaagctggagcaggagctgctgggttaa
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