Sphingopyxis alaskensis: Sala_0979
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Entry
Sala_0979 CDS
T00361
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sal
Sphingopyxis alaskensis
Pathway
sal02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Sala_0979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sal03021
]
Sala_0979
Transcription machinery [BR:
sal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Sala_0979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF6565
Mod_r
Motif
Other DBs
NCBI-ProteinID:
ABF52696
UniProt:
Q1GUH6
LinkDB
All DBs
Position
complement(1003132..1005141)
Genome browser
AA seq
669 aa
AA seq
DB search
MATKNEADTDAPLIDLNEADVKKLIARGKKRGYLTYDELNAALPQDEMSSEQIEDIMSAI
SDMGINIVESDEDVQEEAEQEVDDEVDVSAGTGSVSNPAIEKKKETVDRTDDPVRMYLRE
MGAVELLSREGEIAIAKRIEAGRDTMILGLCESPLTFNAIIEWSNALNNGDMQLREIVDL
EAMLSKDPAPENLDEEGAEDGEISEKTAGVSFKDEDEVEEEPAADGDDEDGEGTSGKRES
FDDDDEDNTLSLAAMEELLKPDALEKFANITKSFKAFQKLQEARLEALSSGEEFPAASEK
KYHKLREELTAQVESVQFHGTKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVPRKSFLD
HYVGRELEENWLEEVAGIDKKWAAFAENEAAAVDRIRVEISEIAQAAGMSLTEFRRVVNM
VQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG
YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRCSRQFLHESGREPTPEEMA
ERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAVQSNLKETV
TRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRS
RKMRSFLDQ
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaagaacgaagccgataccgacgccccgctgatcgacctgaacgaggccgac
gtcaaaaaactgatcgcgcgcggcaagaagcgcggttacctgacctatgacgagctcaat
gcggcgctgccgcaggacgaaatgtcgtccgagcagatcgaggatatcatgtcggccatc
tccgacatgggcatcaacatcgtcgaaagcgacgaggatgtgcaggaagaggccgagcag
gaggtcgacgacgaggtcgatgtttcggcaggcaccgggtcggtttcgaaccccgcgatc
gaaaagaagaaggaaacggtcgatcgcaccgacgatcccgtgcgcatgtatctgcgcgaa
atgggtgcggtcgaattgctgtcccgcgagggtgaaatcgcgatcgcgaagcgcatcgag
gcgggccgcgacacgatgatcctcgggctttgcgaaagcccgctgaccttcaacgcgatc
atcgaatggtcgaacgcgctcaacaatggcgacatgcagctgcgcgagatcgtcgacctc
gaagcgatgctgtcgaaagatccggcgcctgaaaatctcgacgaggaaggcgccgaggac
ggcgagatcagcgaaaagaccgccggcgtctcgttcaaggacgaggatgaggtcgaggaa
gagcctgccgccgacggcgacgacgaggatggcgaaggcacatcgggcaagcgtgaaagc
ttcgacgacgatgacgaggacaatacgctgagcctcgccgcgatggaggaattgctcaag
cccgacgcgcttgagaagttcgcgaacattaccaaaagcttcaaggcgttccagaagctt
caggaagcccggctcgaagcgctgtcgagtggcgaggagtttccggcggcgtcggaaaag
aaatatcacaagctgcgcgaggaactcaccgcacaggtcgagagcgtgcagttccatggc
accaagatcgaatatctggtcgaccagctctacagctacaaccgccgcctgaccgcgctc
ggcggccagatgctgcgccttgccgagcgtcacaaggtcccgcgcaagtcgttcctcgac
cattatgtcggccgcgagctcgaagaaaactggcttgaggaagtcgccggcatcgacaag
aaatgggcggcgttcgccgagaatgaggccgccgcggtcgatcgcatccgcgtcgagatc
agcgagatcgcgcaggccgcgggcatgagcctgaccgagttccgccgcgtcgtgaacatg
gtgcagaagggcgagcgcgaggcgcgcatcgccaagaaggaaatggtcgaggccaacctg
cgcctcgtcatttcgatcgccaagaagtacacgaaccgcgggctgcagttcctcgacctc
attcaggaagggaacatcggcctgatgaaggcggtcgacaagttcgaatatcgccgcggc
tacaagttcagcacctatgcgacctggtggatccgccaggcgatcacccgctcgatcgcc
gatcaggcgcgtacgatccgtatccccgtccatatgatcgagacgatcaacaagctggtg
cgctgcagccgccagttcctccacgaaagcggccgcgagccgaccccggaggaaatggcc
gagcggctgtcgatgccgctcgaaaaggtccgcaaggtgatgaagatcgccaaggagccg
atcagcctcgaaacgccgatcggcgacgaggaagacagccacctcggcgatttcatcgag
gacaagaatgcggtgataccggtcgatgccgcggtgcagtcgaacctcaaggaaaccgtc
acccgcgtccttgcatcgctcaccccgcgcgaggaacgcgtgctgcgtatgcgcttcggc
atcggcatgaacaccgaccatacgctcgaagaagtgggtcagcagttcagcgtgacccgc
gaacgcatccgccagatcgaggcaaaagccctccgcaagctcaagcacccgtcgcggtcg
cgcaagatgcggtcgttccttgaccagtag
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integrated database retrieval system
