Sphingopyxis alaskensis: Sala_1004
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Entry
Sala_1004 CDS
T00361
Name
(GenBank) TonB-dependent receptor
KO
K16092
vitamin B12 transporter
Organism
sal
Sphingopyxis alaskensis
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sal02000
]
Sala_1004
Transporters [BR:
sal02000
]
Other transporters
Pores ion channels [TC:
1
]
Sala_1004
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
OMP_b-brl_3
Porin_2
Motif
Other DBs
NCBI-ProteinID:
ABF52721
UniProt:
Q1GUF1
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Position
complement(1026974..1028830)
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AA seq
618 aa
AA seq
DB search
MFRYSTISMIALAVATPVVAQETNPDADDIVVTASGIEQPGDEVGQAITVIDADTIETRQ
TIDVVDLLATTPGIRFNRTGTTGSVTGVSIRGAETTQTLVLIDGVKVNDPSGIGDGYDFG
HLLTGNIRRIEVLRGSNSVVHGSQAIGGVVNVMTATPGSGFAGGASAEYGYSDTVNARAD
LSGTTGPVSGSIGGAYFRTDGISSAAVGTERDGYENIAANARLKVAFSDALSLDLRGYYI
NADLDFDSFFGAPADSADVARLDQYVGYAGLNLGLFDGRFTSRAAVTWMRNERDYFFVRG
TAPDFGYKGTNLRFEYQGVVAPADTARLVFGYEHERPEYDFFGFGSTDSQKANIDSVYAL
AIVQPLAGLSLTGGVRHDDHNQFGGATTFGANANYSPNGGATNVRLSYGEGFKAPSLFQL
YDSFSGNAALRPERSKSYDVGIDQSLADGRALVSLTAFLRNTTDQINFDNATFTYGNIDR
TRAKGIEATLALKPVDALNVTASYSYIDARDRSGRPAFDGKRLPRRAAHAVSLSADHDWS
FGLSAGATVTMVGDSFDNATNMVRLDGYALAGVRASFAVTERIEVYGRVDNLFDADYATA
FNFGTYGRAAHGGVRARF
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgttcagatattcgaccatttccatgatcgcccttgccgttgcgacccctgtcgttgcg
caggaaaccaaccccgatgccgacgacatcgtcgttaccgcatcgggcatcgaacagccc
ggcgacgaggtcggtcaggcgatcacggtgatcgacgccgacacgatcgaaacgcggcaa
acgatcgacgtcgtcgacctgctcgcaacgacgcccggcatccgattcaatcgcaccggc
accaccggatcggtcaccggcgtgtcgatccgcggcgccgagacgacgcagaccctggtg
ctgatcgacggggtcaaggtcaacgaccccagcggcatcggcgacggttatgatttcggc
catctgctcaccggcaatatccgccgcatcgaggtgctgcgcggatcaaactcggtcgtc
catggcagccaggcgatcggcggcgtggtcaatgtgatgacggcgacgcccggctcgggt
ttcgcaggcggcgcatcggccgaatatggctatagcgacaccgtcaacgccagggccgac
ctgtcgggcaccaccgggccggtgtcgggcagcatcggtggcgcctatttccgcaccgac
ggcatttcgtcggcggcggtcggcaccgagcgcgacggatatgaaaatatcgccgccaat
gcgcggctgaaggtcgcgttcagcgacgcgctgagccttgatctgcgcggctattacatc
aacgccgacctcgatttcgacagcttcttcggcgctccggccgacagcgccgacgtcgcc
aggctcgaccaatatgtcggctatgccgggctgaacctcggcctcttcgacggtcgcttc
accagtcgcgccgcggtgacatggatgcgcaacgagcgcgactatttcttcgtgcgcggc
accgcccccgactttggctataagggcacgaacctgcgcttcgaatatcagggcgtcgtg
gcccccgccgacaccgccaggctggtgttcggttacgagcatgagcgccccgaatatgac
ttcttcggctttggttcgaccgacagccagaaggccaatatcgacagcgtctatgcactc
gccatcgtccagccgctcgccggcctgtcgctgaccggcggcgttcgccacgacgaccat
aaccagttcggcggcgccacgacctttggcgccaacgccaattattcgcccaacggcggc
gccaccaatgtccgcttgagctatggcgaggggttcaaggcgccgtcgctctttcagctc
tacgacagcttcagcggcaatgcggcgctgcgtcccgaacgctcgaaaagctatgacgtc
ggcatcgaccagagcctcgccgacgggcgcgcgctggtgtcgctcaccgccttcctgcgc
aacacgaccgaccagatcaatttcgacaatgcgaccttcacctatggcaatatcgaccgc
acgcgcgccaaggggatcgaggcgacgctggcgctgaaacccgtcgacgcactgaacgtc
acggcgtcgtacagctatatcgacgcgcgcgaccggtcggggcggcccgcgttcgacggc
aagcgcctgccgcgccgcgccgcgcatgcggtcagcctgtcggcggaccatgactggtcg
ttcgggctgtcggccggcgcgacggtcacgatggtcggcgacagtttcgacaatgcgacg
aatatggtgcggctcgacggctatgcgctcgccggggtgcgcgcgtcgttcgcggttacc
gagcggatcgaagtgtacggccgcgtcgataatctgttcgacgccgattatgcgacggcg
ttcaactttggcacctatggccgcgccgcccatggcggggtgcgggcgcgattctga
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