Sphingopyxis alaskensis: Sala_1179
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Entry
Sala_1179 CDS
T00361
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sal
Sphingopyxis alaskensis
Pathway
sal03030
DNA replication
sal03430
Mismatch repair
sal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sala_1179
03430 Mismatch repair
Sala_1179
03440 Homologous recombination
Sala_1179
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sal03032
]
Sala_1179
03400 DNA repair and recombination proteins [BR:
sal03400
]
Sala_1179
Enzymes [BR:
sal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Sala_1179
DNA replication proteins [BR:
sal03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Sala_1179
DNA repair and recombination proteins [BR:
sal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Sala_1179
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
HHH_6
PHP
DUF655
tRNA_anti-codon
COE1_HLH
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABF52895
UniProt:
Q1GTX7
LinkDB
All DBs
Position
1214764..1218252
Genome browser
AA seq
1162 aa
AA seq
DB search
MAFSPFVPLRVFSSYTMLEGAIEPKAIAKAARDRGFPAIAVADRNGLYGVMAFGEACQAA
GVQPIVGALLSVARPGQRLANGAPLIDWLALYAQDARGYHNLCALVSAAHLGRPVEQEPH
VALSDMTGRTDGLICLTGGGEGALARLLAGEQQSAAEDYMEQLEALFGERLYIELSRRGD
ATEAAAENALIDMAYARALPLVATNPANFVEPQFHAAHDAMLCIAQSAYVESEDRRVSNP
EAWLKPAEAMEDAFSDLPEAIRNTLVIAQRCAFMAPKRKPILPSLAGDREGEAAQLKADA
HAGLDARLAHYPDLTDEERQAYVERLDYEIDVITQMGFPGYFLIVADFIKWAKAQDIPVG
PGRGSGAGSVVAWALTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQ
EKYGRDTVAQIITFGKLKARAVLKDTGRVLQMSYGQVDRLAKLVPNHPTDPWTLERALNG
VSELMTEYKQDDGVRRLFDMARQLEGLPRHSSTHAAGVVIGDRPLDQLVPLYRDPRSDMP
VTQFDMKYVETAGLVKFDFLGLKTLSVLKEARRLLALRGIDVDLDTLRWDDAQVYELLQR
GDTVGVFQLESEGMRRTLSAVKPTSFGDIIALVALYRPGPMDNIPLFGARKNGREPIAYP
HPLLEGILAETYGIFVYQEQVMQAAQILAGYSLGGADLLRRAMGKKIQAEMDAQRETFVK
GCGEHNQIDAKTANELFDLIDKFAGYGFNKSHAAAYALLSYQTAWLKAHHPHEFFAASMS
FDSHQTDKLSVFIDDMRRLGIDIAPPSINESEADFSVGRTDDGLAVRYALGALKGVGEKA
MEALVAERQARGDFASLDDFASRIDPKLLNRRQIEALAGAGAFDCVEPDRPRAFAGAEAL
LACANSSAHERSTGQGGLFGGDIAIAPTLQLPAAEPWTLAERMTREKEAFGFYFSAHPVE
QYEAILSARGARSYGDICENVEMTPGTRIPMVMAAMVESARARVSQRGNRFLNLTLSDRS
GQFQSSCFDEAAGRVLEALADEGGCALLSVELDLLEGEETPRVTVRGAQSLADIAATASL
QLLCRVEAPEAIDEMARLLEKRGGARGRVIVVTRNPLTHDDVRIELGRGFVLGPDIVARL
DLVAGISEAALSLVAPREFRVR
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggccttcagcccctttgtccccctgcgcgtcttttccagctatacgatgctcgaagga
gcgatcgagccgaaagcgatcgccaaggccgcgcgcgaccgcggctttcccgcgatcgcg
gtcgccgaccgaaacgggctctatggcgtcatggcctttggcgaggcgtgccaggcggcg
ggggtgcagccgatcgtcggcgcactgctcagcgtcgcgcggccgggccagcggctggcg
aacggcgcgccgctgatcgactggctcgcgctctatgcgcaggacgcgcgcggctaccac
aatctctgcgcgctggtgtcggcggcgcatctggggcggccggtcgagcaggagccgcat
gtcgccttgtccgacatgacgggcaggaccgatggcctcatctgcctgaccggcggcggc
gaaggcgccttggcgcgcctgctcgcgggcgagcagcaaagcgccgccgaggattatatg
gagcaactggaagcgctgttcggcgaacggctctacatcgaattgtcgcggcgcggcgat
gccaccgaagccgccgccgaaaatgcgctgatcgacatggcctatgcgcgcgcgctgccg
cttgtcgcgaccaatccggcgaatttcgtcgagccgcagttccatgccgcgcacgatgca
atgctgtgcatcgcccagtcggcctatgtcgaaagcgaggatcgccgcgtcagcaatccc
gaagcgtggctgaagcctgccgaggcgatggaggatgccttttccgacctgcccgaggcg
atccgcaacacgctggtgatcgcccagcgctgcgccttcatggcgccgaagcgcaagccg
atcctgccgagcctcgccggcgatcgcgagggcgaggcggcgcagttgaaggccgacgcc
catgccggactcgatgcccggctggcgcattatcccgacctgaccgacgaagaacggcag
gcctatgtcgagcggctcgattatgagatcgacgtcatcacgcaaatgggctttccgggc
tatttcctgatcgttgccgacttcatcaaatgggcgaaggcacaggatattccggtgggg
ccaggccgcggatcgggggcgggcagcgtcgtcgcctgggcgctgacgatcaccgatctt
gatcccttgaagctcggtctgctctttgaacgcttcctcaaccccgagcgcgtgtcgatg
cccgacttcgacatcgacttctgcgaaacacggcgtggcgaagtgatccgctatgtacag
gaaaaatacggtcgcgacaccgtcgcgcagatcatcaccttcggtaagctaaaggcacgc
gcagtcctgaaggacaccggccgcgtgctccagatgagctatggccaggtcgaccggctc
gcgaagctggtgccgaaccatccgaccgacccgtggacgctcgaacgcgcgctcaacggc
gtgtccgagttgatgaccgaatataagcaggacgacggggtacggcggctgttcgacatg
gcgcgccagctggaaggcctgccgcggcacagttcgacccacgccgccggggtggtgatc
ggcgaccggccgctcgaccagctcgtcccgctctatcgcgacccgcgctcggacatgccg
gtaacgcagttcgacatgaaatatgtcgagacggcggggctggtgaagttcgactttctg
ggcctcaagacgctgtcggtgctcaaggaagcgcggcggctgctcgcgctgcgcggcatc
gatgtcgatctcgacacgctaagatgggacgatgcccaggtctatgagctgcttcagcgc
ggcgataccgtcggggtgttccagctcgaatccgaagggatgcggcgcacgctgtcggcg
gtcaaaccgaccagtttcggcgacatcatcgcgctggtcgccctctatcgaccgggaccg
atggacaatatcccgctgttcggcgcgcgcaagaacggtcgcgaaccaatcgcctatccg
cacccgctgctcgaaggcatccttgccgaaacatatggcatcttcgtctatcaggaacag
gtgatgcaggccgcgcagatcctcgccggctacagcctcggcggggcggacctgctccgc
cgtgcgatgggcaagaagatccaggccgaaatggacgcgcagcgcgagacattcgtcaag
ggctgcggcgagcataaccagatcgacgccaagaccgcgaacgagctgttcgacttgatc
gacaaatttgcgggctatggattcaacaagagccacgccgccgcctatgctcttctctcc
tatcagaccgcctggttgaaggcgcatcatccgcacgagttttttgccgcgtcgatgtcg
ttcgacagccaccagaccgacaaattatcggtgttcatcgacgacatgcgccggctgggc
atcgacatcgcgccgccgtcgatcaacgagagcgaggccgatttctcggttggccgcacc
gacgatggactggcggtacgctacgcgctcggggcgctcaagggcgtcggcgagaaagcc
atggaggcgctggtcgccgagcggcaggcgaggggcgatttcgcttcgctcgacgatttc
gccagccgcatcgaccccaagctgctcaatcggcggcagatcgaggcgctggccggcgcc
ggagcgttcgattgtgtcgaacccgaccgcccgcgtgcctttgccggtgccgaggctctg
cttgcctgcgccaactcgtcggcgcacgaacgctcgaccggacagggcggcctgttcggc
ggcgacatcgcgatcgcaccgacattgcaacttcccgccgccgaaccctggacactcgcc
gagcggatgacgcgcgaaaaggaggcgttcggcttttatttctcggcgcacccggtcgag
caatatgaagcgatcctgtcggcgcgcggcgcgcgctcatatggcgacatatgcgaaaat
gtcgaaatgacgccgggcacgcgcatcccgatggtgatggcagcgatggtcgaaagcgcg
cgggcgcgcgtgtcgcagcgcggcaaccgcttcctcaacctgacgctctccgatcgcagc
ggtcagttccagtcgagctgtttcgacgaggcggcaggcagggtgctggaggcgttggca
gacgagggcggctgcgcgctgctctcggtcgaactcgacctgctcgagggggaggagacg
ccacgggtcacggtgcgcggcgcgcagtcgctcgccgacatcgcggcgaccgcctcgctc
cagctcctctgccgcgtcgaggcgcccgaggccatcgacgaaatggcgcgcctgctcgag
aaacgcggcggcgcgcgcgggcgggtgatcgtcgtcacgcgcaatccgctgacccacgac
gatgtgcggatcgagctgggacgcggatttgtgctcggtcccgacatagttgcccgcctc
gacctggtggcagggatttccgaagcggcgctgtcgctggtcgcgccgcgcgagttccgg
gtgcgctga
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