Sphingopyxis alaskensis: Sala_1211
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Entry
Sala_1211 CDS
T00361
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sal
Sphingopyxis alaskensis
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sal03032
]
Sala_1211
03400 DNA repair and recombination proteins [BR:
sal03400
]
Sala_1211
Enzymes [BR:
sal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Sala_1211
DNA replication proteins [BR:
sal03032
]
Prokaryotic type
DNA Topoisomerases
Sala_1211
DNA repair and recombination proteins [BR:
sal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Sala_1211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Toprim_4
DUF7343
Motif
Other DBs
NCBI-ProteinID:
ABF52927
UniProt:
Q1GTU5
LinkDB
All DBs
Position
1251170..1253719
Genome browser
AA seq
849 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGRDFKVLASYGHVRDLPPKDGSVDPDDGFAMQWQLYPDKAK
RLKEISDAAKGADRLILATDPDREGEAISWHVQELLRSKKALPAAVDRVTFNAITKQAVT
DAMRHPRELDTDLIDAYRARRALDYLVGFTLSPVLWRKLPGAKSAGRVQSVALRLVVERE
REIEAFVAQQYWSVTGLFEMGGTPFKARLSRWRGDKIERLSITSEADARAAEADVKAGHF
TVDTVETKPLTRNPPPPFTTSTLQQEAARKLGFSASHTMRIAQALYEDGAITYMRTDGVQ
MDGSAISAARKAIATRYDGGYVPDKPRQYQTKAKNAQEAHEAIRPTDFGKDKVGGGDHAR
LYELIWKRALASQMASARLERTSVELSDGTGKTTLRATGQVVKFPGFLALYDEGRDDAED
EDARLLPAMAKGDAPAKTGVEVERHETQPPPRYSEASLVKKMEELGIGRPSTYASILQVL
KDRDYVRVEKNRFIPEESGRLLTAFLERFFERYVGYDFTAELEEELDDVSGGRAQWQAVL
ERFWRDFKPRTGEVMEQKPSEITAALDEFLGPYLFPDKSDGSDPRLCPNCGTGRLALRGG
KFGPFIACSNYPDCKFTRKFAQSGGNGEADNGPETLGTDPESGLEVTKRSGRFGPYIQLG
EGSEAKRSSIPKDIPAEDFDLDYALRLLSLPREVGVHPESGKPIMAGLGRYGPYLLHDGK
YAKLGGTAEIFDIGMNAAVVRIAEAANGGGRGRAKAEPLNTFGPHPTSGGEMKLMEGRYG
PYVTDGTTNATLPKTTDPATLTMEEAIALIDARAAKGPVKGKKKAAPKKKAAAKKAAAKE
APARKTAAE
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgcaattggtaattgtggaatcgccggcaaaggcgaaaacgatcgagaaatatctcggt
cgcgatttcaaggtgctggccagttatggccatgtccgcgacttgccgccgaaggacggc
tcggtcgatcccgacgacggctttgcaatgcagtggcagctttatcccgacaaggcgaag
cggctgaaggagatttcggacgccgccaagggcgccgaccgcctgatcctcgcgaccgac
cccgatcgcgagggcgaggcgatcagctggcatgtgcaggaattgctgcgcagcaaaaag
gcgctgcccgcggccgtcgatcgcgtgacgttcaatgcgatcaccaagcaggcggtgact
gacgcgatgaggcatccgcgcgagctcgacaccgacctgatcgacgcctatcgcgcacgc
cgcgcgctcgactatctggttggtttcacattgtcgccggtgctgtggcgcaagctgccc
ggtgccaagtcggcggggcgggtccagtcggtcgcgctgcgcctcgtcgtcgaacgcgag
cgcgagatcgaggcctttgttgcgcagcaatactggtcggtgaccggtctgttcgaaatg
ggcggcacgcccttcaaggcgcggctgtcgcgttggaggggcgacaagatcgagcggctc
tcgatcacctccgaagccgatgcgcgcgcggccgaagccgacgtgaaggcgggccatttc
accgtcgatacggtcgagacgaagcccctgacccgcaacccgccgccgcccttcaccacc
tcgaccctgcaacaggaggctgcgcgcaagctgggtttttcggcgagccacacgatgcgc
atcgcgcaggcgctctacgaagatggcgcgatcacctatatgcggaccgacggcgtccag
atggacggcagcgcgatcagcgccgcgcgcaaggcgatcgcgacgcgctacgatggcggc
tatgtcccggacaagccgcggcagtatcagaccaaggcgaaaaatgcgcaggaagcgcat
gaggccatccgccccaccgatttcggcaaggacaaggtgggcggcggtgaccatgcgcgg
ctctacgagctgatctggaagcgcgcgctcgccagccagatggcgtcggcgcggctcgaa
cgcaccagtgtcgaattgagcgatggcaccggcaagacgacgctgcgcgcgacggggcag
gtggtgaagtttccgggcttccttgctctctatgatgaaggccgcgacgatgcagaggac
gaggatgcgcgcctgctgccggcgatggcgaagggagatgcgccggcgaaaaccggcgtc
gaagtcgagaggcacgaaacgcagcctccgccacgctattcggaagcgagcctcgtcaag
aagatggaggaactcggcatcgggcgaccgtcgacctatgcctcgatccttcaggtactg
aaggatcgcgactatgtgcgggtcgagaagaaccgcttcattcccgaagagagtggtcgg
ctgctcaccgccttcctcgaacgcttcttcgaacgttatgtcggctatgatttcacggcg
gagcttgaggaagagctggacgacgtatcaggcggccgcgcgcagtggcaggcggtgctc
gaacgcttctggcgcgacttcaagccgcgcaccggcgaggtgatggagcagaagccatcg
gagattaccgcggcgctcgacgagttcctcggtccctatctcttccccgacaagagcgac
ggtagcgacccccggctctgccccaattgcggcaccgggcggttggcgctgcgtggcggc
aagttcgggccattcatcgcgtgcagcaactatcccgactgcaagttcacgcgcaaattc
gcgcagtcaggtggtaatggcgaggcggataacggacccgagacgctgggcaccgatccc
gaaagcgggctggaggtcacgaagcgcagcggacgtttcggtccatacatccagctcggc
gaggggagtgaggcaaaacgctcgtcgatccccaaggacatcccggcggaggatttcgac
ctcgactatgcgctccggctcctcagcctgccgcgcgaggtcggggtgcatcccgaaagc
ggcaagccgatcatggccggcctgggtcgctacggcccctatctgctccacgatggcaaa
tatgcgaagctgggcggcaccgccgaaatctttgacatcggcatgaacgccgcggtcgtc
cgtatcgccgaggcggcgaatggcggcggacgcgggcgtgcaaaggccgaaccgctcaac
acctttggcccgcacccgacgagcggcggcgagatgaagctgatggaagggcgctatggt
ccctatgtcaccgacggcacgaccaacgccaccttgcccaagaccaccgacccggcgacg
ctgacgatggaagaggcgatcgcgctgatcgacgcacgcgcggcgaagggcccggtgaag
ggcaagaagaaggcggcgccgaagaaaaaggcggctgcgaagaaagctgcggcgaaggag
gcacccgccaggaagacggcggccgagtag
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