Sphingopyxis alaskensis: Sala_1485
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Entry
Sala_1485 CDS
T00361
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sal
Sphingopyxis alaskensis
Pathway
sal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Sala_1485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sal03021
]
Sala_1485
03400 DNA repair and recombination proteins [BR:
sal03400
]
Sala_1485
Enzymes [BR:
sal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Sala_1485
Transcription machinery [BR:
sal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Sala_1485
DNA repair and recombination proteins [BR:
sal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Sala_1485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABF53198
UniProt:
Q1GT24
LinkDB
All DBs
Position
complement(1542641..1546924)
Genome browser
AA seq
1427 aa
AA seq
DB search
MNQLTNFMNPVAKPETFDMIKIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVLEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAG
IGAEAIRTLLENLDLEQERTDLMEELATTKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSLEREGEPGEGMLLADMAEVHQALHI
GAVTLHSKIISRVPQTDEKGNEYLKRFETTPGRMLIGECLPKSHTVPFDVVNRLLTKKEI
GDVIDQVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMIIPASKEQLVDETRSLV
KDFEQQYQDGLITQQEKYNKAIDAWSQCGDKVANAMMDEIRATPKLPDGRLAPINSIYMM
AHSGARGSQAQMKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVVIEEDCGTTRGMEMRAIIQGGSTIASLGERILGRTTL
EDVVDKDGNVIAPVGTLLDEATTQRIEEAEVQSVKIRSPLVCEATLGVCGKCYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQVNEQSNVEAISDGTIEYRDMATIV
DQRGRRLALSRSGEIAIIDSEGRERASHKLPYGAQIMHKDGEKVKKGDRIAEWDPFTMPL
ITEKQGVVKYQDLIDGKTLTEQVDEATGIAQRVVIEYRAAGRSKKEDLQPRITLLDDASG
EAARYLLAVGTMISVEDGQTVQAGDVLARVSREASKTRDITGGLPRVAELFEARIPKDNS
VIAKISGRIEFVKDYKAKRKIAIVPEEGDPIEYLIPKSKVLEVQEGDMVKRGDALISGSP
NPHDILDVMGVEALAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTLL
PGEQLDYLEMMEYNAKLPKNGKPAEGRPVLLGITKASLQTRSFVSAASFQETTRVLTEAS
VQGKVDSLQGLKENVIVGRLIPAGTGAAMNRVRVTASSKDAALRAAMRVANQEHLIAPRT
AAEEHAAELAQGPEAAIGDDPLGKVQGEDFTTDDVMVEERPEGASEE
NT seq
4284 nt
NT seq
+upstream
nt +downstream
nt
atgaaccagcttaccaacttcatgaacccggtcgcgaagcccgaaaccttcgacatgatc
aagatcggcatcgcgagccccgagcgcatccgctcgtggtcgtttggcgagatcaagaag
cccgaaacgatcaactaccgcacgttcaagcctgaacgtgacgggctgttctgcgcgcgc
attttcggtccgatcaaggattatgaatgcctgtgcggcaagtacaagcgtatgaaatac
aagggcatcgtctgcgaaaaatgcggtgtcgaagtcacggtcacgaaagtgcgccgcgag
cgcatgggccatatcgagcttgccgcacccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtcctctat
ttcgaagcctatatcgtccttgagcccggcctgaccccgctcgagaagttccagctgctg
accgaagacgaactgctcgacgcgcaggacgagtatggcgaagatgctttttcggccggt
atcggcgccgaggcgatccgcactctgctcgaaaatctcgacctcgagcaggaacgcacc
gacctgatggaagagctggcgacgaccaagtcggagctcaagcccaagaagatcatcaag
cgcctgaaagtcgtggaatccttcatcgaatcgggcaaccgccccgaatggatgatcctg
gaggtcgttccggtcatcccgcccgaactgcgcccgctggtgccgctcgacggcggccgc
ttcgcgacgtcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccgtctg
aagcgcctgatggaactgcgtgcgccggacatcatcgtccgcaacgagaagcgcatgttg
caggaagccgtcgacgcgctgttcgacaacggccgccgcggtcgcacgatcaccggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtcaccggtccc
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagcttttcaagccg
ttcatctatgcgcgcctcgacgccaagggtctgtcgatgaccctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggacatcctcgacgaggttattcgcgagcac
ccggtcctcctgaaccgtgccccgacgctccaccgcctcggcatccaggcgttcgagccg
gtgctgatcgagggcaaggcgatccagctgcacccgctggtctgcgccgcgttcaacgcc
gacttcgacggcgaccagatggcggtccacgtcccgctctcgctggaagcccagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctcagccccgcaaacggcaagccgatc
atcgtgccgtcgcaggacatggttctcggcctctattatctctcgctggagcgcgaaggc
gagccgggcgaaggcatgttgctcgccgatatggccgaagtccatcaggcgctgcatatc
ggcgcggtcacgctgcactcgaaaatcatcagccgcgttccgcagaccgacgagaagggc
aatgaatatctgaagcgctttgaaaccacgccgggccgtatgctgatcggcgaatgcctg
ccgaagtcgcacactgtgccctttgacgtcgtcaaccgccttctgaccaagaaggaaatc
ggcgacgtgatcgaccaggtctatcgccataccggccagaaggagacggtgctgttcgcc
gacgccatcatggcgctgggtttccgtcatgctttcaaggcgggcatctcgttcggcaag
gacgacatgatcattccggcttcgaaggagcagctggtcgacgaaacccgctcgctggtg
aaggatttcgagcagcagtatcaggacggcctgatcacgcagcaggaaaaatataacaag
gcgatcgatgcctggtcgcagtgcggcgacaaggtcgcgaacgcgatgatggacgaaatc
cgcgctacgccgaagctgcccgacggccgtctggccccgatcaactccatctatatgatg
gcgcattcgggtgcccgcggctcgcaggcacagatgaagcagctcgccggcatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaaacgccgatcatctcgaacttcaaggaa
ggcctgaccgttctcgagtatttcaactcgacccacggtgcgcgcaagggtctggccgat
acggcgctcaagacggcaaactcgggttatctgacccgccgtctggtcgacgtgtcgcag
gattgcgtcgtgatcgaggaagattgcggcaccacccgcggcatggaaatgcgcgcgatc
atccagggcggctcgacgatcgcctcgctcggcgagcgcatcctcggtcgcacgacgctg
gaagacgtcgtcgacaaggacggcaatgtcatcgcgcccgtcggcaccttgcttgacgaa
gcgacaacgcagcggatcgaagaggccgaggtccagtcggtcaagattcgctcgccgctc
gtttgcgaagcgacgctgggcgtttgcggcaaatgctatggccgcgacctggcccgcggc
acgccggtcaatatcggcgaagcggtgggggttatcgctgcgcagtcgatcggcgaaccc
ggcacccagctgaccatgcgcaccttccacattggcggggcggcgcaggtcaacgaacag
tcgaacgtcgaggcgatttcggacggtacgatcgaatatcgcgacatggcgacgatcgtc
gaccagcgcggccgccgcctggcgctgtcgcgttcgggcgagatcgcgatcatcgacagc
gaaggccgcgaacgcgcgtcgcacaagctgccctatggtgcgcagatcatgcacaaggac
ggcgaaaaggtgaagaagggcgaccggattgccgaatgggatccgttcaccatgccgctg
atcaccgaaaagcagggcgttgtgaaatatcaggatctgatcgacggcaagacgctgacc
gaacaggtcgacgaagcgacgggcatcgcccagcgcgtggtgatcgaatatcgcgccgcc
ggacgcagcaagaaggaagaccttcagccgcgcatcaccctgctcgacgacgcatcgggc
gaagctgcacgctatctgctcgcggtcggcacgatgatctcagtcgaggacgggcagacg
gtgcaggcgggcgacgtactggcgcgtgtgagccgcgaagcgtcgaagacgcgcgacatc
accggcggtctgccgcgggttgccgagctgttcgaagcgcgcattccgaaggataacagc
gtcatcgcgaagatcagcggccgcattgagttcgtcaaggactacaaggcgaagcgcaag
atcgcgatcgttccggaagaaggcgatccgatcgaatatctgatccccaagtcgaaggtg
ctggaagtgcaggaaggcgacatggtcaagcgcggcgatgcgctgatctccggctcgccg
aacccgcatgacatcctcgacgtcatgggcgtcgaggcgctggccgaatatctggtcgcg
gagatccaggaagtctatcgactccagggcgtgaagatcaacgacaagcacatcgaggtg
atcgttcgccagatgctgcagaaggtcgagatcaccgatggcggcgacaccacgctgctg
ccgggcgaacagctcgattatctggagatgatggaatataacgccaaactgcccaagaac
ggcaaaccggccgagggccgcccggtcctcctcggcatcaccaaggcgagcctgcaaacg
cgcagcttcgtttcggcggcgtccttccaggaaacgacccgcgttctcaccgaagcgtcg
gtgcagggcaaggtcgactcgctgcaggggctcaaggaaaatgtcatcgtcggccgcctc
atcccggcgggtaccggcgctgccatgaaccgtgtccgcgtcaccgcctcgtcgaaggat
gccgcgctgcgcgccgcgatgcgtgttgcgaaccaggagcatctcattgcgccgcggacc
gcagccgaggagcatgcggccgaactcgcgcagggccccgaagcggcgatcggcgacgat
ccgctgggcaaggtgcagggtgaggatttcacgaccgacgatgtgatggtcgaggaacgc
cccgaaggcgccagcgaggaataa
DBGET
integrated database retrieval system
