Sphingopyxis alaskensis: Sala_1606
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Entry
Sala_1606 CDS
T00361
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
sal
Sphingopyxis alaskensis
Pathway
sal04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
Sala_1606
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sal03019
]
Sala_1606
03009 Ribosome biogenesis [BR:
sal03009
]
Sala_1606
04131 Membrane trafficking [BR:
sal04131
]
Sala_1606
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sal04147
]
Sala_1606
Messenger RNA biogenesis [BR:
sal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
Sala_1606
Ribosome biogenesis [BR:
sal03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
Sala_1606
Membrane trafficking [BR:
sal04131
]
SNARE
SNARE associated proteins
Others
Sala_1606
Autophagy
Aggrephagy
Other aggrephagy associated proteins
Sala_1606
Exosome [BR:
sal04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
Sala_1606
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
AAA_16
RuvB_N
AAA_22
AAA_33
AAA_5
CDC48_2
AAA_2
AAA_14
TIP49
IstB_IS21
nSTAND3
AAA_18
AAA_28
RNA_helicase
NPHP3_N
Mg_chelatase
ATPase
AAA_7
Sigma54_activat
AAA_24
AAA_lid_PRS2_C
Zeta_toxin
AAA_30
AAA_17
AAA_3
DUF815
AAA_11
ABC_tran
Vps4_C
AAA_19
TsaE
AAA_25
Parvo_NS1
NB-ARC
Viral_helicase1
Sigma54_activ_2
bpMoxR
MazE_antitoxin
Motif
Other DBs
NCBI-ProteinID:
ABF53319
UniProt:
Q1GSQ3
LinkDB
All DBs
Position
complement(1683270..1685591)
Genome browser
AA seq
773 aa
AA seq
DB search
MAEAVVKEKQVKLQVANARAEESGGGIARIPRAAMAELGLSEGDVVQISGKRDTASRVVA
PYPEDEGLNVIRLDGLQRANAGAGAGDMVVLSRVETRPATRVVFAPAQENLRLQGSANAL
KRSFFGRPLVAGDTVATAGQQRVSAGDMPPQLRQMLNAPAYALAEVRLLVVSASPKGVVT
IDENTEVELLPEYQEPHDARRTDVTYDDLGGLGETIDQLREMVELPLRYPELFRRLGVDP
PRGVLLHGPPGTGKTRLARAVANESEAQFFLINGPEIMGSAYGESEKRLRDIFEAAAKAA
PSILFIDEIDSIAPKRGQVHGEAEKRLVAQLLTLMDGLEPRTNLVVIAATNRPDAIDEAL
RRPGRFDREIVIGVPDEKGRREILGIHTRGMPLGDDVDLDELARTTFGFVGADMAALTRE
AAIEAVRRIMPRLNLEDGTIPSEVLDELSVLRADFNNALKRVQPSAMREVMVQAPKTRWS
DIGGLDAARDKMIEGIELPLKHPEAFRRLGIRPAKGFLLYGPPGTGKTLLAKAAARESDA
NFIAIKSSDLLSKWYGESEQQIARLFARARAVAPTIIFIDELDSLVPARGSGTSGEPQVT
ERVVNTILAEMDGIEEMQSVVVIGATNRPNLIDPALLRPGRLDELIYVSVPDREGRRRIL
EIQTGKMPLAGDVDLALLAERTARFTGADLEDLSRRAGLAALKRSIGADTVTMADFEAAL
KDTRASVTEAMEKDYEKIQGEIKQKAMSVDPIGFFAPGMLKPVRDQKHDEPRD
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
ttggccgaagcagtggtaaaagaaaaacaggtcaaattgcaggtcgcgaacgcccgcgcg
gaggaaagcggtggcgggatcgcgcgcatcccgcgcgcggcgatggccgagctgggcctc
agcgaaggcgacgtcgtgcagatcagcggcaagcgcgacacggcatcgcgcgtcgtcgcg
ccctatcccgaggatgaggggctgaacgtcatccgccttgacggcctgcagcgggccaac
gccggcgctggcgcgggtgatatggtggttctgagccgcgtcgaaacacgcccggcaacg
cgcgtcgtctttgcgcccgcgcaggaaaatctgcgcctgcaaggctcggcgaacgcgctc
aagcgcagctttttcggccgcccgctcgtcgcgggcgatacggtcgcgaccgcggggcag
cagcgcgtttccgccggtgacatgccgccgcaactgcgccagatgctcaacgccccggcc
tatgcgctggccgaggtgcggttgctcgtcgtgtcggcgagtcccaagggcgtcgtcacg
atcgacgagaataccgaggtcgagctgctccccgaatatcaggaaccgcacgacgcgcgt
cgcaccgacgtcacctatgacgatctgggcggccttggcgagacgatcgaccagctgcgc
gagatggtcgagctgccgctgcgctatcccgaactttttcgccgcctcggcgtcgatccg
ccgcgcggtgtgctgctgcacggtccgccgggaaccggcaagacgcggctcgcccgcgcc
gtcgcgaacgagagcgaggcgcaattcttcctgatcaacgggcccgagatcatgggcagc
gcctatggcgaatccgaaaagcggctgcgcgacattttcgaggctgcggccaaggcggcg
ccgtcgatcctgttcatcgacgagatcgattcgatcgcgccgaaacgcggacaggtgcat
ggcgaggccgaaaagcgcctcgttgcgcaattgctcacgctgatggacgggctggagcca
cgcaccaacctggtcgtgatcgccgcgaccaaccgccccgacgcgatcgacgaagcgctg
cggcggccgggccggttcgaccgcgagatcgtgatcggagtccccgacgagaagggacgg
cgcgagatattgggtatccacacgcgcggtatgccgctgggcgacgatgtcgacctcgac
gaactggcgcgcacgacctttggcttcgttggcgccgacatggccgcgctgacccgcgaa
gcggcgatcgaggcggtgcggcggatcatgcccaggctgaacctcgaggacgggaccatc
ccgtccgaggtgctcgacgaactcagcgtgctgcgcgccgacttcaacaatgcgctgaag
cgcgtccagccgtcggcgatgcgcgaggtaatggtgcaggcgcccaagacccgctggagc
gacatcggcgggctcgacgcggcgcgtgacaagatgatcgagggtatcgaactgccgctg
aagcaccccgaagcctttcgccgtctcggcatccgcccggccaagggtttcctgctctat
ggcccgccgggcaccggcaagacgctgctcgcgaaggcggcggcgcgcgaatcggacgcc
aatttcatcgcgatcaaatcgtcggacctgctctccaaatggtatggcgagagcgaacag
cagatcgcgcgcctgttcgcgcgcgcccgcgcggtcgccccgacgatcattttcatcgat
gaactcgacagcctggtccccgcgcgcggcagcggcacgtcgggcgagccgcaggtgacc
gagcgcgtcgtcaatacgatcctcgccgaaatggacgggatcgaggagatgcagtcggtc
gtcgtgatcggtgcgaccaaccgcccgaacctgatcgaccccgcgttgctgcgccccgga
cggctcgacgaactgatttacgtgtcggtgcccgaccgcgaggggcggcggcgcatcctg
gaaatccagactggcaagatgccgctggcaggcgatgtcgaccttgcgctgttggcggaa
cggaccgcgcgcttcactggcgccgacctggaagacctgtcgcgccgcgcggggctggcg
gcgctcaagcgctcgatcggcgccgacacggtcacgatggccgatttcgaggcggcgctg
aaagatacgcgggcttccgtgaccgaagccatggaaaaggattatgaaaagatccagggc
gagatcaagcagaaggcgatgagcgtcgacccgatcggctttttcgcgccgggaatgctg
aaaccggtccgcgaccagaagcatgatgagccgcgcgactga
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