Sphingopyxis alaskensis: Sala_1752
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Entry
Sala_1752 CDS
T00361
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sal
Sphingopyxis alaskensis
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sal03016
]
Sala_1752
Enzymes [BR:
sal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Sala_1752
Transfer RNA biogenesis [BR:
sal03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Sala_1752
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
ABF53465
UniProt:
Q1GSA7
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All DBs
Position
1845105..1846292
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AA seq
395 aa
AA seq
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MQVHPLIDTNAALLEFCDRVKDSDFIAVDTEFMRENTFWPELCLIQVADTEHAAAIDPMA
QGMDLKPLLDLLVDNEDMLKVFHAGGQDVEIIFNLTGKTPHPIFDTQIGQMALGQAEQVG
YSNLVEAWLGLQLDKGARFTDWSRRPLDKRQIDYAIGDVTHLAKIFPMMLDKLIRTGRGH
WLDEEMEKLADPANYSVDPDKAWQRIKIPSRKPDVLGRLRALAAWREREARNKNLPRGRI
VKDETLADLAAHPPKDQDGLGRVRGLSATWKSNDIGARLMDALTNAKPLGKDDMPDRAPR
GPGLGKEGALVADLLKLLLKIRARELNVAARLIARSDDLEALAAGSRKGIPMMEGWRYEV
FGHAALDLVEGRMGFAVKNGKLVMSEIDAAVAAET
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtccatccgttaatcgataccaatgccgcgctcctcgaattttgcgatcgtgtc
aaggacagcgatttcatcgccgtcgataccgaattcatgcgcgaaaacaccttctggccc
gaactgtgcctgatccaggtcgcggataccgaacatgccgccgcgatcgatccgatggcg
caaggcatggatttgaagccgctgctcgacctgctcgtcgacaatgaggatatgctgaag
gtctttcacgccggggggcaggatgtcgaaatcatcttcaacctgaccggcaagacgccg
cacccgattttcgacacgcagatcggccagatggcgctcggtcaggccgaacaggtcggc
tattcgaacctcgtcgaggcatggctgggcctccagctcgacaagggcgcgcgcttcacc
gactggagccgccgcccgctcgacaagcggcagatcgactatgcgatcggcgacgtgacg
catctggcgaaaatctttccgatgatgctcgacaagctgatcaggaccggccgcggccac
tggctcgacgaagaaatggagaagctcgccgatcccgccaattacagcgtcgatcccgac
aaggcgtggcagcggatcaagatcccgtcgcgcaagcccgacgtgctcggtcgcctgcgc
gcgctcgccgcgtggcgcgagcgcgaggcgcgcaacaagaatctgccgcgcggccgcatc
gtcaaggacgagacgctcgccgacctcgccgcgcacccgccaaaggaccaggacgggctg
ggccgcgtccgcgggctgtcggcaacgtggaaaagcaacgacatcggcgcgcggctgatg
gatgcgctgacgaacgccaagccgctcggcaaggacgatatgcccgaccgcgcgccgcgc
gggccggggctgggcaaggagggcgcactcgtcgccgacctgctcaagctgctcctgaaa
atccgcgcgcgcgaactcaacgtcgcggcgcgactgatcgcgcggagcgacgacctggag
gcgctggcggcgggttcgcgcaagggcatcccgatgatggagggctggcgctacgaggtt
ttcggtcacgcggcgctcgacctcgtcgaaggccgcatgggctttgcggtgaagaacggc
aagctggtgatgagcgagatcgacgcggcggtggctgccgaaacatga
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