Sphingopyxis alaskensis: Sala_2642
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Entry
Sala_2642 CDS
T00361
Name
(GenBank) type III restriction enzyme, res subunit
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
sal
Sphingopyxis alaskensis
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sal03021
]
Sala_2642
Transcription machinery [BR:
sal03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
Sala_2642
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DEAD
ResIII
AAA_22
AAA_34
Cas3-like_C_2
DUF8263
Motif
Other DBs
NCBI-ProteinID:
ABF54347
UniProt:
Q1GPS5
LinkDB
All DBs
Position
complement(2784862..2787996)
Genome browser
AA seq
1044 aa
AA seq
DB search
MLVELPGQKGVGKLQSAAEGRCVVSIFHSIQRSEDIECEVSAVVRAYLSPQTRAYVLDDG
RMRVGRISDYLQQENGLVTYEVRFPNGKQKDFSEIDLFVRPWNAPEDPAEMLAAGAAESQ
YLHDRRQAALTPLRSLTSAAQGLTSLLSAGIDFVPHQVAAVRRVLSDPIQRYLLADEVGL
GKTIEAGLIIRQHLIDNPDTEVLIATPSALCEQWRRELSEKLRLDQFGEPFECCSHAEIE
RVARTPDVLVVDEAHHLVGLEDGPLSASAARLRELARDVPVLLLLSATPPLGEEARFLAL
LNLLDPLTHPLDDLDGFRLKLEQRRAIGRLLLSLDPDASGIVLRQRGAELVRSFPDDPVV
QELAPQLIEATREAPERLVDLCGALKEHIADSYRIHQRLIRSRRADAQGWEFRPRGPDGG
AMTHVRIEGDPSDNLAVLLGTLEDWRSAAVDSLVDGDPGVPLLAARYRNLLGAVSEGADA
LRAWLTGVMPIFAGEAEILDALREQAQDYDDADRIETMVESVRRLIKTLRADVDQPKIVV
FATAEALATAFHRALEEALGDTPCFLLVSGGDAGNDKEDGVAAFAQAPDAAVLIGDRTAE
EGLNLSFSDAIVHLDLPLSAARIEQRIGRLDRYGRRQGIIRHRILLPSDEDESPFAAWQA
LLADGLSIFHRSISDVQFLLDDFETRALDTLLMTGPNALIALAEEIKGQIADERKSQDEQ
YALDRIALAEEPVETFIQALDDAEADEAALEAGVDQWLIDTLQLKKRPYAWPEEDPFKLG
ITKQTLIPRLPWQQQLELDDSQPLSWKRRIATRRTAVTLLRPGTPHIDVLARFTRWDDRG
TAFVTYRPVADWLGDAWIGFKLCFTIEPSLDIADLLAPSRAELATLRRAQRYFAQSEQTL
FIDINGEMVIDPALLAILSKPYNGHGKGLSADINLGSRPHILADYIDPAVFPAVCRRVRN
GARQTLSEQPAVLDAITAATTLAASDLQRRRNRLQRRQSAGDSMAREDIALIESILPSIA
SPAIRLDAMGCFILGGALTRSAHG
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgctcgtcgaattgcccgggcaaaagggcgtcgggaagctgcaatctgcggccgagggc
cgctgcgtcgtctcgatcttccactcgatccagcgcagcgaagatatcgagtgcgaggtg
agcgcggtcgtccgcgcctatttgagcccgcagacccgggcctatgttctcgacgacggg
cgtatgcgggtcggtcgcatcagcgactatcttcagcaggaaaatggccttgtcacttat
gaggtccgcttccccaacgggaagcaaaaagacttcagcgagatcgacctattcgtccgg
ccgtggaatgcgcccgaggatccggccgaaatgctcgcggccggcgccgccgaaagccag
tatctgcacgaccgccggcaagccgcgctgacgccgctgcgatcgctgaccagtgcggct
caaggtctgacgtcgctgctctcggccgggatcgacttcgtgccgcaccaagtcgcagcg
gtgcgccgcgtgctcagtgatccgatccagcgctatctcctcgccgacgaggtcgggctg
ggcaagacaatcgaggccgggttgatcatccgccagcatctgatcgacaatcccgacacc
gaggtactgatcgcgaccccgtcggcgctgtgcgagcagtggcggcgcgaactttccgaa
aagctccgcctcgaccagttcggcgagcccttcgaatgttgctcgcatgccgaaatcgag
cgggtcgcgcgaacacccgatgttctggtggtcgacgaagcgcatcatctggttggactc
gaggacggcccgctttcagcatcggcggctcggttgcgcgagctcgcccgagacgtgccg
gtgttgttgctgctgtccgcaacgccgccgcttggcgaggaggctcggttcctggcactg
ctcaatttgctcgatccgctgacccatccgctcgacgatcttgacggttttcgcctgaag
ctcgaacagcgccgggcgatcggccgcttgctccttagtctcgacccggacgcatcgggc
attgtgctgcgccagcgcggcgctgaactagtccgtagctttcccgacgatcctgtagtc
caagagttggcgccgcagttgattgaggcaacgcgagaggcacccgaacgactcgtcgac
ctatgcggcgcgctcaaggagcatatcgccgacagctatcgcatccaccagcgtctgatc
cgctcgcgtcgcgccgatgcccagggatgggagtttcgaccacgcggacctgatggcggc
gccatgacccatgtgcgcatcgaaggcgatccgagcgacaacctggcggtgctgcttggc
acgcttgaagactggcggtcggctgcggtcgactcgctagtcgatggcgatccgggggtg
ccgcttctcgccgcgcgctaccgcaatcttctcggcgcggtgtccgaaggcgctgacgct
cttcgcgcctggctgactggtgtcatgccgatcttcgccggcgaggcggaaatcctcgac
gcgctgcgcgagcaagcccaggactacgacgatgccgaccgcatcgaaacgatggtcgaa
agcgtgcggaggctaatcaagacgctgcgggccgacgtcgatcagcccaagatcgttgtg
ttcgcgacggctgaggcgctggcaaccgcgttccatcgagcgctggaggaggcgctcggc
gacacaccgtgctttctactcgtctcgggaggtgacgcgggcaatgacaaggaggacggc
gtcgcggcgttcgcgcaagcgcccgatgctgcggttctcatcggcgaccggacggccgaa
gaaggtctcaatctcagtttctccgatgcgatcgtgcatctcgacctgccgctgagcgct
gcccggatcgagcagcgcatcggccgcctcgaccgctatggccggcgacaggggatcatc
cgtcaccggatactcttgccttcggacgaagacgaaagcccctttgcagcctggcaggcg
ttgctcgccgacggcctgtcgattttccaccgctcgatcagcgatgtgcaattcctgctg
gatgatttcgagacccgcgcgctcgacaccctgctgatgaccgggcccaatgctctaatc
gcgctggccgaggagatcaaaggccagatcgccgacgaacgaaagtcgcaggacgaacaa
tatgccctcgaccggatcgcgcttgcagaggaaccggtcgaaacattcatccaggctctg
gatgacgccgaagctgatgaggcggcgcttgaggctggcgtcgatcaatggctgatcgac
acactgcaactcaagaagcggccctacgcctggcccgaggaagatccgttcaagctcggt
ataaccaagcagaccttgatcccgcgcttgccgtggcaacagcaattggaactcgacgac
agccagccgctgagctggaagcgccggatcgcgacacgccggaccgccgtgaccttgctg
cgcccgggtacgccgcacattgacgtgctggcgcgcttcacgcgctgggacgatcgcgga
accgcgttcgtcacttatcggccggtcgcggactggcttggcgacgcctggatcggattc
aagctctgcttcacgatcgagcccagtctcgacatcgccgacctgctcgcgccgtcgcgc
gccgaacttgccacgttacgccgcgcgcagcgctattttgcgcaaagcgagcagaccctg
ttcatcgacatcaatggtgaaatggtcatcgatcctgcgctgctcgcaatcctgtccaag
ccgtataacgggcatggcaaaggcctgagcgccgacatcaatctcggaagccggccgcat
atcctcgccgattatattgaccccgctgtgtttccggcagtgtgccgtcgcgtgcggaac
ggcgcgcggcaaaccttgtctgagcagcccgccgtgctcgatgcgatcaccgcggcgacg
acactggcggcaagcgatctacagcggcgccgaaaccggctccagcgccgccaatcggcc
ggcgactcgatggcacgcgaggatatcgctctgatcgagtcaatcctgcccagcatcgca
tcacccgccatccggctcgacgccatgggatgtttcatcctgggtggggcgctcacgagg
tccgctcatggttga
DBGET
integrated database retrieval system
