Sphingopyxis alaskensis: Sala_3012
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Entry
Sala_3012 CDS
T00361
Name
(GenBank) ATP-dependent DNA helicase, Rep family
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sal
Sphingopyxis alaskensis
Pathway
sal03420
Nucleotide excision repair
sal03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sala_3012
03430 Mismatch repair
Sala_3012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sal03400
]
Sala_3012
Enzymes [BR:
sal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sala_3012
DNA repair and recombination proteins [BR:
sal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sala_3012
MMR (mismatch excision repair)
Other MMR factors
Sala_3012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ABF54717
UniProt:
Q1GNQ5
LinkDB
All DBs
Position
complement(3152830..3155142)
Genome browser
AA seq
770 aa
AA seq
DB search
MPHPPASTPDLPRPDPSDPPYLHGLNGPQRQAVLTTEGPVLMLAGAGTGKTAALTARLAH
IIATRRAWPSEILAVTFTNKAAREMRERIGRMIGDAVEGMPWLGTFHSICARMLRRHAEL
VGLQSNFTILDTDDQLRVLKQLIQAEGLDEKRWPARQLAGLIDKWKNRGLTPADLDAADK
EAYADGKGQHFYALYQARLKTLNACDFGDLLLHMLVILKTHRDVLEQYQARFKYILVDEY
QDTNASQYLWLRLLAQSRKNICCVGDDDQSIYSWRGAEVANILRFEKDFPGATVIRLEQN
YRSTPQILAAASALIAQNSDRLGKTLWTELDAGDKLRVVGVWDGPEEARRIGEELETLQH
RGVNLDRTAILVRAQFQTREFEDRFIAIGLPYRIVGGFRFYERAEIRDALAYLRLVQSSA
DDLAFERIVNVPKRGLGDKALQRIHQFARAERAPLFHAASRITETDELTPQARRQLASFI
AQMRNWQAKVGELSHPELTQLILDESGYTAMLQADRSAEAAGRLENLSELVRAMEEYDSL
EAFLEHVSLVMDRDNDESAETVTIMTIHAAKGLEFDHVFLAGWEDGVFPSQRAMDEGGTA
SLEEERRLAYVAITRARRRASIYHAANRRIYGQWMSSIPSRFIAEIPPDHIEMENSFGGG
QSLWRANWSAQGDPFAHVAERQPSRTMTRGPAWQRAVAASNTVTRAPAPSERGPAASVGA
KPRADLAIGQRVFHEKFGYGEIIDIDGNKLEVEFDQAGSKRVLDSFVRAA
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
gtgccccatccccccgcctcgacgcctgacctcccccgccccgacccttcggacccgccc
tatctgcacggcctgaacgggccgcagcggcaggcggtcctcactaccgaagggccggtg
ctgatgcttgccggcgccggtacgggcaagaccgccgcgctcaccgcgcgcctcgcgcac
atcatcgccacgcggcgggcatggccgtccgaaatcctcgccgtcaccttcaccaacaag
gcggcgcgcgagatgcgcgagcggatcgggcgaatgatcggcgacgcggtcgaggggatg
ccctggctcggcacctttcacagcatttgcgccaggatgctgcgccgtcatgccgaactg
gtgggcctgcaaagcaatttcaccatcctcgataccgacgaccagcttcgcgtcctcaaa
cagctgattcaggccgaggggctcgacgagaagcgctggccggcgcgccagctcgccggg
ctgatcgacaaatggaaaaaccgcggcctcacccccgccgacctcgatgccgccgacaag
gaggcctatgccgacggcaaggggcagcatttctatgcgctctatcaggcacggctgaaa
acgctgaatgcctgcgatttcggcgacctcctgctgcacatgctggtgatcctgaagacg
caccgcgacgtgctcgaacaatatcaggcgcgtttcaaatatatcctcgtcgacgagtat
caggacaccaatgccagccagtatctctggctccgcctgctcgcgcaaagccgcaaaaac
atctgctgtgtcggcgacgacgaccagtcgatctattcgtggcgcggcgccgaggtcgcg
aacatcctgcgcttcgaaaaggattttcccggcgcgacggtgatccgcctcgaacagaat
taccgctcgacgccgcagatcctggcggccgcgtcggcgctcatcgcgcagaactcggac
cggctcggcaagacgctgtggaccgagctcgacgcgggcgacaagctgcgcgtcgtcggc
gtgtgggacgggccggaggaagcacgccggatcggcgaagaactggaaacgctccagcat
cggggcgtgaacctcgaccgcaccgccattcttgtccgcgcgcagttccagacgcgcgag
ttcgaggaccgcttcatcgcgatcggcttgccctaccgcatcgtcgggggtttccgcttc
tatgaacgcgccgaaatccgcgacgccctcgcctaccttcgcctcgtccagtcgagcgcc
gacgacctcgccttcgagcgcatcgtcaacgtccccaaacgcgggctgggcgacaaggcg
ctgcaacgcatccaccagttcgcgcgggccgagcgcgcgccgctgttccacgccgcctcg
cggatcaccgaaaccgacgaactgaccccgcaggcccgccgtcagctcgccagtttcatc
gcccagatgcggaattggcaggcgaaggtcggcgaactctcgcaccccgagctgacgcag
ctcatcctcgacgaatcgggctacaccgcgatgctgcaggccgaccgcagcgccgaagcc
gcggggcgcctcgaaaacctctccgaactcgtccgggcgatggaagagtatgactcgctc
gaagccttcctcgagcatgtcagcctcgtcatggaccgcgacaatgacgagtcggccgaa
accgtcacgatcatgacgatccacgccgccaaggggctcgagttcgaccatgtcttcctt
gcggggtgggaggatggcgttttcccgtcgcagcgcgcgatggacgaaggcggcaccgcc
agcctcgaagaagaacggcgcctcgcctatgtcgcgatcacccgcgcgcgccggcgcgcg
agcatctatcacgccgcgaaccgccgcatctatggccagtggatgagcagcatccccagc
cgcttcatcgccgaaatcccgcccgaccatatcgagatggaaaacagcttcggcggcggg
cagagcctgtggcgcgccaattggtcggcgcagggcgatcccttcgcgcatgtcgctgaa
cgccagccatcgcgaacgatgacgcgcggccccgcgtggcagcgcgcggtagcggcatcg
aacaccgtcacccgcgctccggcgccctccgaacgcggccccgccgcgtcggtcggcgcc
aagccgcgcgccgacctcgcgatcgggcagcgcgtgttccacgagaagttcggctacggc
gaaatcatcgacatcgacggcaacaagctggaggtcgagttcgaccaggcgggatcgaaa
cgcgtgctcgacagtttcgtccgcgccgcctga
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