Sphingopyxis alaskensis: Sala_3014
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Entry
Sala_3014 CDS
T00361
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sal
Sphingopyxis alaskensis
Pathway
sal03410
Base excision repair
sal03430
Mismatch repair
sal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Sala_3014
03430 Mismatch repair
Sala_3014
03440 Homologous recombination
Sala_3014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sal03400
]
Sala_3014
DNA repair and recombination proteins [BR:
sal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
Sala_3014
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Sala_3014
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sala_3014
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF6986
Motif
Other DBs
NCBI-ProteinID:
ABF54719
UniProt:
Q1GNQ3
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All DBs
Position
complement(3155863..3157629)
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AA seq
588 aa
AA seq
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MSEAALGITCSIAGQSWRWRRASADMAAENLAPDDLVTQLLLARGVARDDLDRQRTPTLR
GFMPDPSLFRDMDAAAARLADAVERREAVTIFGDYDVDGATSAALLVRLLRALGTTVGAY
IPDRLMEGYGPSGAALVKIGEAGSKLIVTVDCGAQAFEAIAEANAAGVEVIVVDHHQCAT
SLPAALALVNPNRLDESPDAAVHGNLAAVGVAFLLGAALLRTLRARGFFAGREEPALIEL
LDLVALGTVADVARLTGFNRALVTQGLKVMARRGNIGLAALMDAARLTRPPGASDMGFAL
GPRINAGGRVGKSDLGVRLLTTDDPQEAADIAQQLCRLNEERRTIEAAVLDEALAASAAC
GNAPVAIVAGEGWHPGVIGIVAGRLKERLHRPAIVIAVDADGIGKGSGRSISGVDLGAAI
LAAKETGLLVAGGGHAMAAGLTVAADRVDALGAFLSDRLAADVERASGERALLIDAVLAP
RGISPLWCDAIESAGPYGAGWPAPRVATGPVRIVESGIVGTDHVRLIVAGDDGARFKAVA
FRSAETVLGQTLLGARGRKLWLAGRAKRDDWGSRPAAELHLEDAAWAD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaggcggcactgggaatcacctgctcgatcgcgggccagtcgtggcgctggcgg
cgtgcgagcgccgacatggcggcggaaaatctcgcgcccgacgaccttgtcacgcaattg
ctgctcgcgcgcggggtggcgcgcgacgatctcgatcgccagcgcaccccgaccctgcgc
ggcttcatgcccgacccgtcgctgttccgcgacatggatgccgccgcggcgcggctcgcc
gatgccgtcgaacgccgggaggcggtgacgatcttcggcgattatgacgtcgacggggcg
acatcggccgcgctgctcgtccgcctgctgcgggcgctcggcacaactgtcggcgcctat
atccccgaccgtctgatggaaggctatggcccgtcgggcgccgcgctggtgaagatcggc
gaggcggggtcgaaacttatcgtcaccgtcgattgcggcgcacaggcgttcgaggcgatc
gccgaagccaatgccgccggcgtcgaggtgatcgtcgtcgaccatcaccaatgcgcgacc
agcctgcccgccgcgcttgcgctggtgaaccccaaccggctcgacgagtcgcccgacgca
gcggtccacggcaatctcgccgcggtcggcgtcgccttcctgctcggcgcggcgctgctt
cgcacattgcgcgcgcgcggcttttttgcgggccgcgaggaacccgcgctgatcgagctt
ctggaccttgtcgcactcggcaccgtcgccgacgtcgcgcggctcaccggcttcaatcgc
gcgctggtgacgcaggggctgaaagtgatggcgcggcgcggcaatatcggcctcgccgcg
ctgatggacgcggcgcggctgaccaggccgccgggcgcaagcgacatgggcttcgcgctc
ggtccgcgcatcaacgcgggcgggcgcgtcggcaagtcggacctcggcgtgcgcctgctc
acgaccgacgatccgcaggaagccgccgatatcgcgcagcaactgtgccgcctcaacgag
gagcgccgcacgatcgaggcggcggtgctcgacgaggcgctggcggcgagcgccgcgtgc
ggcaacgcgcccgtcgcgattgtcgccggcgaaggctggcaccccggcgtgatcggcatc
gtcgccgggcggctcaaggaacggttgcaccgccccgcgatcgtgatcgcggtggacgcg
gacggtatcggcaagggatcggggcgctcgatttcgggcgtcgacctgggcgcagccatt
ctcgccgccaaggaaacgggcttgctcgtcgccggcggcggccatgcgatggcggcggga
ctcacggtggccgccgaccgggtcgatgcgcttggcgcctttttgagcgaccgcctcgcc
gccgatgtcgagcgcgcgagcggcgagcgtgcgctgctgatcgacgccgtgctcgcgccg
cgcgggatctcgccgctctggtgcgacgcgatcgaaagcgctggcccctatggcgccggt
tggcccgcgccgcgcgtcgcgacggggccggtgcgaatcgtcgaatcggggatcgtcggc
accgatcatgtccgcctgatcgtcgcgggcgacgatggcgcgcggttcaaggcggtcgcc
tttcgcagcgccgaaacggtgctgggccagaccctgctcggcgcgcggggacgcaagctg
tggctcgcgggccgggcaaaacgcgacgactggggcagccgccccgccgccgagctgcac
ctcgaggatgctgcctgggccgactga
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