Salinibacterium sp. UTAS2018: ESZ53_12800
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Entry
ESZ53_12800 CDS
T05816
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sala
Salinibacterium sp. UTAS2018
Brite
KEGG Orthology (KO) [BR:
sala00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sala03019
]
ESZ53_12800 (hrpA)
Enzymes [BR:
sala01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ESZ53_12800 (hrpA)
Messenger RNA biogenesis [BR:
sala03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ESZ53_12800 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
AAA_22
T2SSE
SLFN-g3_helicase
nSTAND3
AAA_30
AAA_23
ResIII
AAA_16
UvrD-helicase
ABC_tran
PhoH
FtsK_SpoIIIE
SRP54
NACHT
Zeta_toxin
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QAV71685
UniProt:
A0A410YMJ7
LinkDB
All DBs
Position
complement(2687323..2691213)
Genome browser
AA seq
1296 aa
AA seq
DB search
MTYPPELPVSQRKDDILAAIRDNQVVIIAGATGSGKTTQLPKILLELGKTSIGHTQPRRI
AARTVAERIAEELGTEMGDLVGYQVRFTDRVGKNTRVKLMTDGILLNEIHRDRDLKKYDA
IIIDEAHERSLTVDFLLGYLKQLRARRPDLSIIITSATIDPESFSKHFDGAPIIEVSGRT
FPVEIRYRPLVAEENVGDDLESEDAEEAAANRADRDYLEGINDALDELSRESDGDVLVFL
SGETEIRDAEEAIRGRINAGKLSEGTEVLPLYGRLSAAEQHRVFESRRTPGTRRRIVLAT
NVAETSLTVPGIRYVIDAGTARISRYSTRAKIQRLPIEAISQASANQRSGRSGRTSDGIA
IRLYSEEDFNARPEFMEPEILRTNLAAVILQMVSLGLGNIAEFPFLQPPDSRGIKDGLDL
LTELGAVENTAGIRSTKTSSSANGPRTGASSKDAKDAAPRITRIGKQLTQLPIDPRLARM
VIESKQHSTTREVMAIVAALSIQDPRERPLDKRPQADQQHARFIDPTSDFLTLLNLWNYL
EEKQKELSGNQFRRMCKNEYLNYLRVREWHDVYRQLSRMAKPLGLVIGDAHSNPDGIHRS
LLAGLLSHIGLKDVAKRDYIGARQTRFVIFPGSALAKKQPNAIMSAELVETSRLFARTNA
AIDPVWAEKLAGDLVKRSYSEPHWEKKQGAAVAFERVTLYGVTLAARRRIQFSRVDLPAA
RELFIRHALVEGEDDLTKRDKRVWGFDASNRALRRDLEQLEERSRRRDILHDDETIFEFY
DKRIPATVASVRDFEGWWKKARHDSPDLLTLTTNDLLENADDAEVDDTAFPTTWVRGDQT
LSLTYRFEPGTDDDGVTIAVPLPLLAGLRPEGFDWQVPGLREELVTALIKSLPKPIRRNV
VPAADWARRLLESVPDDPATAALDDGPGLTDYLAKEIARLTYVKVAASDFDLDRVPPHLK
VTFAVINERGKKVGANKSLRSLQASLKPVARESVARAVEGAAPPAGGRPAETLERSGITA
WDFGTLDRSRDTKHGGNTIRAYPALVDVGDSVSIRLMSTPYDQGIAHQGGVRRLLLLAIP
SPLGYINEHLTGNEKLVLAQSPYRSTNALFDDCLRACVDSVIGDREVFEQAEFEALRNEI
SAGLVDSLFATVSLVASIVSGVRLADKAIRAATSMHLIAPLGDAREQLDALVFPGFVSAT
GLTQLRRLPVYLKGIEHRVTKLTENPGRDRGWMSEVELATRRYKDAGGTLPLEQHPEPQI
ARARWMLEELRLSLFAQHLGTAESVSLQRIAKVLAS
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtacccgcccgagctgcccgtcagccagcgcaaagatgacattttggcggccatc
cgcgacaaccaagtcgtgatcatcgcgggagcgaccggtagcggaaaaaccacccagcta
cccaagattttgttggaactgggtaagacatccatcgggcacacgcagccgcgaaggatc
gccgcgcgcacggtggccgagcgcatcgccgaagagctcggcaccgaaatgggtgacctc
gtcggttaccaagtgcgtttcaccgaccgtgtgggcaaaaacacgcgtgtgaagctgatg
accgacggcatcctgctgaatgagattcaccgcgaccgcgacctcaaaaagtacgacgcg
atcatcatcgacgaggcccacgaacgcagcctcaccgtggacttcttgctcggctacctc
aagcagctgcgcgcccggcgcccggatctcagcatcatcattacgagtgccacgatcgac
cccgagagcttctcgaagcacttcgatggcgcgccgattattgaggtttctggccgcacc
ttcccggtggagattcggtatcgcccgctcgtcgccgaagaaaacgttggcgacgatctc
gaatccgaggacgccgaagaagctgccgccaaccgcgccgatcgcgactacttggagggc
atcaacgacgcgctcgacgagctctcccgcgagagcgacggcgacgtgcttgtgttcctc
tcgggtgaaaccgagattcgggatgccgaagaggcgatccgcggccgtatcaacgcgggc
aagctctccgaaggcaccgaggtgctccccctttacggtcgcctgagcgccgccgagcaa
caccgggtcttcgagtcacggcgcactcccggcacgcggcgccgtatcgtgctggccacc
aacgtggccgaaaccagcctgaccgttcccggcatccgctacgtcattgacgccggaacc
gcgcgcatcagccggtacagcacgcgcgccaaaattcagcgcctgccgatcgaagcgatc
agccaggccagcgccaaccaacgttcggggcgttccggacgaacgagtgacggtattgcg
atccgcctctactccgaagaggatttcaacgcgcggcccgagttcatggaacccgagatt
ctgcgcaccaacctcgccgcggtcatcctgcagatggtgtcgctcggcctcggcaacatt
gccgagttccccttcttgcagccgccagactcgcgcggcatcaaagacggtctcgacctg
ctgaccgagttgggtgccgtggaaaacactgcgggcatccgcagcacgaaaacgtcgtcg
agcgctaacggcccgcgcacgggcgcaagcagcaaggacgcgaaagatgctgccccgcgc
atcacccgcatcggcaagcaactcacgcagcttcccatcgaccctcgcctcgcgcgcatg
gtgatcgaatcgaagcagcacagcacgacgcgcgaagtcatggcgatcgtcgccgcgctc
agcattcaagacccccgcgagcgccccctcgataaacgcccgcaagccgaccagcagcac
gcgcgcttcatcgaccccacgagcgactttctcaccctgctcaacctctggaactatctc
gaagagaagcagaaagagctctcgggcaaccagttccgacgaatgtgcaagaacgaatac
ctcaactatttgcgggtgcgcgaatggcacgacgtgtaccgccagttgagccggatggcc
aagccgcttgggctggttattggcgacgcgcactcgaaccccgacggcatccatcgctcg
ctgttggcgggtcttctcagccacattggcctcaaggacgtcgcgaagcgcgactacatt
ggcgcgcgtcaaacccgctttgtcatcttccccggctcggccctcgcgaagaaacaaccc
aacgcgatcatgagcgccgagctcgtggaaacgagcaggctcttcgctcgcacgaatgct
gccatcgatcctgtctgggccgaaaagcttgctggcgatctcgtgaagcgcagctattcc
gaaccgcactgggagaagaagcaaggtgctgccgtagcgttcgaacgcgtcactctctat
ggcgtaacgcttgccgcccgccggcgcatccagttctcccgcgtcgatctgcctgcagcc
cgcgaattgttcattcgccacgctctcgtggagggcgaagatgacctcaccaagcgcgac
aagcgggtgtggggcttcgacgcctccaaccgcgcgctgcgtcgagacctcgaacagctc
gaagaacgcagccgccgtcgcgacattctgcacgacgacgaaaccatcttcgagttctac
gacaagcgcattcccgccaccgtcgcctccgttcgtgatttcgagggctggtggaagaaa
gcgcgccacgattcccccgacctgctcacgctcaccacgaatgacctgctcgagaacgcg
gatgacgctgaagtcgacgacaccgccttcccgaccacgtgggtgcgcggcgatcaaacg
ctgagcctcacgtatcgctttgaacccggaaccgacgatgacggcgtcaccatcgcggtg
ccgctcccgctgctcgccgggctgcgccccgaaggcttcgactggcaggttcccggcctg
cgtgaagaactcgtgactgcgctgatcaagtcgctgccgaagccgatccgtcgcaacgtc
gtgcccgccgccgactgggcccggcgtctgctcgagagcgtgccggacgatccggcgact
gccgccctcgacgacggccccggcctgactgattatctcgccaaagaaatcgctcgcctg
acctatgtgaaggttgcggcatccgacttcgatctcgatcgcgtgcccccgcatctcaag
gtcaccttcgccgtgatcaacgagcgtggcaagaaggtcggcgccaacaagtcactgcgc
agcctgcaggccagcctcaagccggtcgcccgcgagagcgtcgcgcgggccgttgaaggc
gccgcaccgcctgcaggcggccgcccggcggagacgctcgaacgctccggcatcaccgcg
tgggatttcggcacgctcgatcgctctcgcgacaccaagcacggtggcaacacgattcgg
gcctaccccgcgctcgtggatgtcggcgactcggtttcgattcgcctcatgtccactccc
tatgaccagggcattgcccatcagggcggggttcgtcgtttgttgttgctagcgatcccc
tcgccgctcgggtacatcaacgaacatctcacgggcaacgaaaagctcgtgctagcgcag
agcccgtaccgctcgacgaacgccctcttcgacgactgcttgcgcgcctgtgtcgactcc
gtaatcggcgatcgcgaggtgttcgaacaggccgagttcgaggcgctgcgtaacgaaatt
tcggcagggctggtggactcgctctttgcaacggtctccctcgtggcatccatagtgtcg
ggagttcgactggccgataaagccattcgtgccgcgaccagcatgcatctgattgcaccc
ctcggcgatgcgcgcgaacagcttgatgcactcgtgttccccggcttcgtttcggcgaca
ggactcacccaactgcgccgcctccccgtctacctcaagggcatcgagcaccgcgtcacg
aagctcaccgagaaccctggccgcgaccgcgggtggatgtccgaagtcgagttggcgacc
cgccgctacaaggacgcgggcggcacgctgccgctggagcagcatcccgaaccgcagatt
gcccgcgcccggtggatgctcgaagaactgcgcttgagtctcttcgctcagcacctcgga
acggccgaatcggtgagccttcagcgcatcgcgaaggtgctcgcttcctga
DBGET
integrated database retrieval system
