Streptomyces albidoflavus: XNR_3644
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Entry
XNR_3644 CDS
T02545
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
salb
Streptomyces albidoflavus
Pathway
salb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
XNR_3644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salb03019
]
XNR_3644
03400 DNA repair and recombination proteins [BR:
salb03400
]
XNR_3644
Enzymes [BR:
salb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XNR_3644
Messenger RNA biogenesis [BR:
salb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
XNR_3644
DNA repair and recombination proteins [BR:
salb03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
XNR_3644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
AGI89983
LinkDB
All DBs
Position
4170122..4172221
Genome browser
AA seq
699 aa
AA seq
DB search
MNGTSGMASTSTDGGTPAYDGPEGFPDDLFDGGPPEEDPFGDEPFPDEAFGEDGTREELS
GAFPEGSGEAPVHDRRDALATLRSVFGYDAFRGDQEAVIDHLVGGGDAVVLMPTGGGKSL
CYQIPAMVRPGTGVVVSPLIALMQDQVDALRAAGVRAGFINSTQDFEERRLTEAEFLAGE
LDLLYLAPERLRVDATLELLSRGKISLFAIDEAHCVAQWGHDFRPDYLALSVLGERWPDV
PRVALTATATDATHQEITRRLALPDAKHFVASFDRPNIQYRIVPKNDPKKQLLTFLKEEH
PGDAGIVYCLSRNSVERTADFLRDHGVEAVPYHAGLDARTRATNQSRFLREDGLVVVATI
AFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGRPSTAWMAYGLQDVVQQRKLIQS
GEGDEAHRRRSQSHLDAMLALCETAQCRRAQLLRYFGQEPTGENCGNCDTCLTPPETWDG
TVAAQKAMSTVVRLKRERNQKFGTGQIIDILMGRKTAKVIQFDHDQLSVFGVGQELSEGE
WRGAVRQLLAQGLLAVEGEYGTLVLTDEAGEVLGGRREVRFRKEPKKAPSSRGSRSGSAA
GSGGRKSKAVIDLPEESLPVFEALRAWRAAQAREQGVPAYVIFHDATLREITAARPTTLD
ALGQIGGIGDKKLQNYGPGVLETLAEQGIGEAPDSPAGA
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgaacggaacgagcggcatggcgagcaccagcacggacggcggcacccccgcgtacgac
ggccccgagggcttccccgacgacctcttcgacggcggccccccggaggaggaccccttc
ggcgacgagcccttcccggacgaggcgttcggcgaggacggcacccgcgaggagctgtcc
ggcgccttccccgaggggagcggcgaggccccggtccacgaccgccgggacgcgctcgcc
accctgcgctccgtcttcgggtacgacgcgttccgaggcgaccaggaagccgtcatcgac
cacctggtcggcggcggcgacgcggtcgtcctcatgcccaccggcggcggcaagtccctc
tgctaccagatcccggcaatggtgcgccccggcaccggcgtcgtcgtctccccgctgatc
gccctcatgcaggaccaggtcgacgccctgcgcgcggccggcgtccgtgccggcttcatc
aactccacccaggacttcgaggagcgccgcctcaccgaggccgagttcctcgccggcgaa
ctggacctgctctacctcgcccccgagcggctgcgcgtcgacgccaccctggaactgctc
tcacgcggcaagatctccctcttcgccatcgacgaggcgcactgcgtcgcccagtggggc
cacgacttccgccccgactacctggccctctccgtcctcggcgagcgctggccggacgtc
ccgcgggtcgccctcaccgccaccgcgaccgacgccacccaccaggagatcacccgccgg
ctcgccctgcccgacgccaagcacttcgtcgccagcttcgaccggcccaacatccagtac
cggatcgtccccaagaacgacccgaagaagcagctcctcaccttcctcaaggaggagcac
ccgggcgacgcgggcatcgtctactgcctctcgcgcaactcggtcgagcgcaccgccgac
ttcctccgcgaccacggggtcgaggccgtcccgtaccacgcggggctcgacgcgcggacc
cgcgccaccaaccagtcccggttcctgcgcgaggacggcctggtcgtcgtcgccaccatc
gccttcggcatgggcatcgacaagcccgacgtccgcttcgtcgcccacctcgacctgccg
aagtcggtcgaggggtactaccaggagaccggccgcgcgggccgcgacggccgcccctcc
acggcctggatggcgtacggcctccaggacgtcgtgcagcagcgcaagctcatccagtcc
ggcgagggggacgaggcgcaccggcgccgctcccagtcccacctagacgcgatgctcgcc
ctctgcgagaccgcccagtgccgccgcgcccaactgctccgctacttcggccaggagccc
accggcgagaactgcggcaactgcgacacctgcctcactccgccggagacctgggacggc
acggtcgccgcgcagaaggccatgtccaccgtggtccgcctcaagcgcgagcggaaccag
aagttcggcaccggccagatcatcgacatcctgatgggccgcaagacggccaaggtcatc
cagttcgaccacgaccagctctccgtcttcggcgtcggccaggagctgagcgagggcgag
tggcgcggggccgtgcgccagctgctggcccaaggactgctggccgtcgagggggagtac
ggcacgctggtcctcaccgacgaggcgggcgaggtgctcggcggccgccgcgaggtccgc
ttccgcaaggagcccaagaaggccccctcgtcccggggcagcaggtccggctcggccgca
ggctcgggcggccgcaagagcaaggccgtcatcgacctccccgaggagtccctccccgtc
ttcgaggccctccgcgcctggcgcgccgcccaggccagggaacagggcgtccccgcctac
gtgatcttccacgacgccaccctccgcgagatcaccgcggcccgccccaccaccctcgac
gccctcggccagatcggcggcatcggcgacaagaaactccagaactacggcccgggagta
ctggagaccttggcggaacaggggatcggcgaggccccggacagcccggccggcgcttga
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