Streptomyces albidoflavus: XNR_5644
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Entry
XNR_5644 CDS
T02545
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
salb
Streptomyces albidoflavus
Pathway
salb03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
salb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
XNR_5644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salb03400
]
XNR_5644
Enzymes [BR:
salb01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
XNR_5644
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
XNR_5644
DNA repair and recombination proteins [BR:
salb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
XNR_5644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
Zn_ribbon_TFIIB
Zn_ribbon_RRN7
NFACT_N
Ribosomal_S13
HVO_2718
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
AGI91950
UniProt:
D6B633
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All DBs
Position
6372697..6373557
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AA seq
286 aa
AA seq
DB search
MPELPEVEALREFLAVHAVGRTVERVLPVAFHVLKTYDPPATDLAGQRITAVDRYGKFLD
LTVGPLHLVTHLARAGWLKWQDTVPAAPPRPGKGPLALRVVLDDGSGFDLTEAGTQKRLA
VYVVRDPADVPGIARLGPDPLADGFDRDRLAALLAPESRLLKGALRDQSLIAGIGNAYSD
EILHAARLSPFKNAGRLTDEETTALYEALRTTLTDAVERGRGVAAGHLKKEKKTNLRVHG
KDGEPCPVCGDTIRSVNFADSSLQYCPHCQTGGKVLADRRLSRLLK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctgccggaagtcgaagccctgcgggaattcctcgccgtccacgccgtcggc
cggacagtggagcgggtcctgccggtcgccttccacgtcctgaagacctacgacccgccc
gccaccgacctggccgggcaacggatcaccgccgtcgaccggtacggcaagttcctcgac
ctgaccgtcggcccgctccacctcgtcacccacctggcccgcgccggctggctcaagtgg
caggacaccgtccccgccgccccgccccggcccggcaagggcccgctggccctgcgcgtc
gtcctcgacgacggctccggcttcgacctcaccgaggccggcacgcagaaacgcctcgcc
gtgtacgtggtccgcgaccccgccgacgtccccggcatcgcccggctcggccccgacccg
ctcgccgacggcttcgaccgcgaccggctcgccgcgctcctcgcccccgagagccgcctg
ctcaaaggcgccctgcgggaccagagcctgatcgccggcatcggcaacgcctacagcgac
gagatcctgcacgccgcccggctctccccgttcaagaacgccggacgcctcaccgacgag
gagaccaccgccctgtacgaggcgctccgcaccaccctcaccgacgccgtcgagcgcggc
cggggcgtcgccgccggccacctcaagaaggagaagaagaccaacctgcgggtccacggc
aaggacggcgaaccctgccccgtctgtggcgacaccatccgctcggtcaacttcgccgac
tcctccctccagtactgcccccactgccagaccggcggcaaggtcctcgccgaccgccgc
ctcagccgcctgctcaagtga
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