Homoserinimonas hongtaonis: C2138_03985
Help
Entry
C2138_03985 CDS
T05414
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
salc
Homoserinimonas hongtaonis
Pathway
salc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2138_03985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salc03021
]
C2138_03985
03019 Messenger RNA biogenesis [BR:
salc03019
]
C2138_03985
Transcription machinery [BR:
salc03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C2138_03985
Messenger RNA biogenesis [BR:
salc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C2138_03985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
PIP5K
NACHT
Motif
Other DBs
NCBI-ProteinID:
AWB90530
LinkDB
All DBs
Position
809789..812023
Genome browser
AA seq
744 aa
AA seq
DB search
MRLPELQALAASLGITGVTKLRKGALVDAINETQNTSSSDQAAPAQTASAPVQTAAQDAP
AEAVATAPRKRAPRRATATGGVITTTSAPAEKAAPAEKAAPAEKAAPVEQAAPAAAADTA
VENAAAEAEKPARKAPARKRTAPKVAAEHANGAESGVDTVAAEPAAAQPAGAESAPAASE
TAETEAPARGRGRRPARGENADQNDKANDKAEIDTTSGSGDDSADSGDDDENSERPQRSR
NRNRNRKGEKNDSQRGENRDRDRDRDRDNRENRDNQRDGQRDAQKGNQRGDQNDRDDNGQ
DDRGQRRQQQDRQQGDRQQTERQQQERQHDDERGGRGRYRDRKRRGGGNDDFEPEISDDD
VLIPVAGILDVLDNYAFVRTTGYLPGNNDVYVSLGQVKKYNLRKGDAVVGAIRQPRDGDN
QGGRQKYNAIVKIDTINGLPVEQAGDRVEFGKLTPLYPSERLRLETEPQKLTTRIIDLVS
PIGKGQRGLIVSPPKAGKTLVLQAIANAIAKNNPEVHLMVVLVDERPEEVTDMQRTVKGE
VIASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILS
GGVDSSALYPPKRFFGAARNIEDGGSLTILATALVETGSKMDEVIFEEFKGTGNMELRLS
RQLADKRIFPAVDVNASGTRREEMLMGVDEVKVTWKLRRALAGVDTQQALEIVLGKLKET
TSNVEFLMQIQKSLPTAAGKTEKD
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgcgccttcccgagctccaggctctcgcggcgtcgctcggcattaccggcgttaccaaa
cttcgtaaaggagccctcgtggacgcaatcaacgagacccagaacacttcatcatccgac
caggcagcgcctgcgcagaccgcgtctgctcccgtgcagacggcggctcaggatgctccg
gcagaggccgtagcaaccgcgccgcgcaagcgtgccccacgccgggcaacggcaacgggg
ggcgtcatcacgacgacctccgcgcctgccgaaaaggcagcgcctgccgaaaaggccgcg
cccgccgagaaggcagcacccgtcgagcaggccgctcccgcggccgctgcagacacagcg
gttgagaatgccgcggccgaggcagagaagcccgcccgcaaggctcccgcccgcaagcgc
accgcacccaaggtggccgctgagcacgccaatggtgccgagtccggtgttgacaccgtg
gcagcagagcccgccgctgcacagcccgccggtgcagagtccgctccggccgcctctgag
accgccgagaccgaggcgcctgcccgtggccgtggacgtcgtcccgcccggggggagaac
gccgaccagaacgacaaggcaaacgacaaggcagagatcgacacgacctctggctcaggt
gacgacagcgccgactccggtgatgacgacgagaactcggagcgcccgcagcgcagccgc
aaccgcaaccgcaaccgcaagggcgagaagaacgactcccagcgtggcgaaaaccgcgac
cgtgaccgcgaccgtgaccgcgacaaccgtgagaaccgcgacaaccagcgtgatggtcag
cgcgacgcccagaagggcaaccagcgcggcgaccagaacgaccgtgacgacaacggtcag
gatgaccgcggccagcgccgtcagcagcaggaccgccagcagggcgaccgccagcagacc
gagcgtcagcagcaggagcgccagcacgacgatgagcgcggaggccgcggtcgttaccgt
gaccgcaagcgtcgcggcggcggcaacgatgacttcgagcccgagatcagcgacgacgac
gtactcatccccgtcgccggcatcctcgacgttctcgacaactatgccttcgtgcgcacg
accggatacctccccggcaacaacgatgtttacgtctcgctcggccaggtcaagaagtac
aacctgcgcaagggtgacgccgtcgttggcgccatccgtcagccgcgtgatggtgacaac
cagggtggtcgccagaagtacaacgcgatcgtcaagatcgacacgatcaacggcctcccg
gtggagcaggctggcgaccgcgtcgagttcggcaagctgaccccgctctacccctcggag
cgcctgcgccttgagacggagccgcagaagctgacgacccgcatcatcgacctcgtgtcg
cccatcggcaagggccagcgcggcctcatcgtctcgccgcccaaggccggcaagacgctc
gtactccaggccatcgccaacgcgatcgccaagaacaaccccgaggttcacctcatggtc
gttctcgtcgacgagcggcctgaagaggtcaccgacatgcagcgcaccgtcaagggtgag
gtcatcgcctccaccttcgaccgccccgccgaagaccacacgacggttgccgaactcgcc
atcgagcgcgccaagcgcctcgtcgagctcggccacgacgtcgtcgtgctgctcgactcg
atcacgcgcctcggccgtgcctacaacctggctgccccggcatccggtcgcatcctctcc
ggtggtgtcgactcgtcggcgctctacccgcccaagcgtttcttcggcgccgctcgcaat
attgaggacggcggctcgctgaccatcctggcaaccgcgctcgtcgagaccggttccaag
atggacgaggtcatcttcgaggagttcaagggcaccggcaacatggagctgcgcctgtcg
cgtcagcttgctgacaagcgcatcttccctgcggttgacgtcaacgcctccggcacgcgc
cgcgaggagatgctcatgggcgtcgacgaggtcaaggtcacctggaagctgcgtcgcgcc
cttgcgggtgtcgacacgcagcaggccctcgagatcgttctgggcaagctcaaggagacg
acgtctaacgtcgagttcctcatgcagattcagaagtcgctcccgaccgccgccggcaag
accgagaaggactag
DBGET
integrated database retrieval system
