Homoserinimonas hongtaonis: C2138_05515
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Entry
C2138_05515 CDS
T05414
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
salc
Homoserinimonas hongtaonis
Pathway
salc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2138_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salc03019
]
C2138_05515
03009 Ribosome biogenesis [BR:
salc03009
]
C2138_05515
Enzymes [BR:
salc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2138_05515
Messenger RNA biogenesis [BR:
salc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2138_05515
Ribosome biogenesis [BR:
salc03009
]
Prokaryotic type
rRNA helicases
C2138_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
AWB89069
UniProt:
A0A2U1SY47
LinkDB
All DBs
Position
complement(1128320..1130107)
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AA seq
595 aa
AA seq
DB search
MTSPDSTPQSEAEPAAVTTTFSDLGLSDAVLKALKDVGYETPSAIQAATIPPLLEGRDVV
GLAQTGTGKTAAFALPILSRLDISQKTPQALVLAPTRELALQVCEAFEKYAAHLRGVHVL
PVYGGQGYGVQLSALRRGVHVVVGTPGRIMDHLEKGTLDLSELKYLVLDEADEMLKMGFA
EDVETILADTPDDKQVALFSATMPAQIRRISAKYLHDPEEITVKNKTTTSVNTTQRYLMV
SYPQKVDALTRILEVENFEGMIVFTRTKNETETLAEKLRARGYAAAAINGDVAQAQRERT
VEQLKSGKLDILVATDVAARGLDVERISHVVNFDIPIDTESYVHRIGRTGRAGRSGAAIS
FVTPRERRLLTAIERATRQPLTQMQLPSVEDVNVTRLTRFDDAITEALSQTERISTFRDI
IGHYVKHHDVPEADVAAALAIVSQGETPLLLDPKAERPQRAERETRTWDRDEKPERRARN
SDSSLAPYRLEVGKRHKVEPRQIVGALANEGGLSRNDFGAIKIFPDFSIVELPADLPRAT
LDKLSDTRISGKLIEIRADRGPGARRSDRSERPARSSYGDRPSYDDRPARKPRND
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcccccgatagcaccccacagagcgaggcagaacctgccgctgtgaccaccact
ttttccgatctcggactctccgacgccgtgctcaaagcacttaaggatgtcggatacgag
accccgtcggccattcaggccgccacgatccccccgcttctcgaaggccgcgatgtcgta
ggactcgcccagacgggaaccggtaagaccgcagcatttgcgctgcccatcctctcccgc
ctcgacatctcgcagaagaccccgcaggccctcgtgctcgcccccacccgcgagctcgcc
ctacaggtgtgtgaagcgttcgagaagtacgctgcgcacctccgcggcgtacacgtgctg
cccgtctatggcggtcaaggctacggcgtgcagctttctgcccttcgccgcggtgtgcac
gttgttgtcggcacccctggtcgcatcatggaccacctggaaaagggcaccctcgacctc
tccgagctcaagtaccttgtgctcgacgaggccgacgagatgctcaagatgggcttcgcc
gaagatgtcgagacgattctcgccgacaccccggacgacaagcaggtcgcactcttctcg
gccaccatgccggcccagatccgccgcatctccgccaagtacctgcacgaccccgaagag
atcacggtcaagaacaagaccacgacctccgtcaacacgacacagcgctacctgatggtg
tcgtacccgcagaaggtcgacgccctcacgcgcatcctcgaggtcgagaacttcgagggc
atgatcgtcttcacccgcaccaagaacgagaccgagactctcgccgagaagctgagggcc
cgcggatacgctgcggccgccatcaacggagacgtggcccaggcacagcgtgagcgcacg
gtggagcagctcaagtcgggcaagctcgacattttggtggcgacggacgttgccgcccgc
ggtcttgacgtcgagcgcatcagccacgtcgtcaacttcgatatccctatcgacacagag
tcgtacgttcatcgcatcggacgcacgggtcgcgctggtcgtagcggcgccgcaatcagc
ttcgtaacgcctcgtgagcgacgcctgctcacggcgatcgagcgggcaacgcgccagccg
ctcacccagatgcagctgccgagcgtcgaggacgtcaacgtcacgcgccttacccggttc
gacgacgccatcacggaagcgctgtcgcagacagagcgcatctccacgttccgcgacatc
atcgggcactacgtcaagcaccacgatgtgccagaagcggatgttgctgccgcactggcc
atcgtctcccagggcgagactcccctgcttctcgaccccaaggcggagcgtccgcagcgc
gccgagcgagagacccgcacctgggaccgcgacgaaaagcctgagcgtcgtgcgcgcaac
tccgattcgtcgctcgcgccctaccgtcttgaggtgggcaagcgtcacaaggttgagccc
cggcagatcgtgggcgccctcgccaatgagggtggcctcagccgcaacgactttggtgcg
atcaagatctttcccgacttctcgatcgttgagctgccggccgatctaccccgagcgacg
ctggataagctcagcgatacccgcatcagcggcaagctgatcgagattcgggccgaccgc
ggcccgggtgcacgtcgctccgatcgcagcgaacgccccgctcgctcctcgtatggagac
cgcccctcctatgacgatcggccggctcgcaagcctcgtaacgactag
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