Homoserinimonas hongtaonis: C2138_05860
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Entry
C2138_05860 CDS
T05414
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
salc
Homoserinimonas hongtaonis
Pathway
salc03030
DNA replication
salc03430
Mismatch repair
salc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2138_05860
03430 Mismatch repair
C2138_05860
03440 Homologous recombination
C2138_05860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salc03032
]
C2138_05860
03400 DNA repair and recombination proteins [BR:
salc03400
]
C2138_05860
Enzymes [BR:
salc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C2138_05860
DNA replication proteins [BR:
salc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C2138_05860
DNA repair and recombination proteins [BR:
salc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C2138_05860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AWB90583
LinkDB
All DBs
Position
1201248..1204709
Genome browser
AA seq
1153 aa
AA seq
DB search
MLDGAARVKPLIDAAVEQQMPAVAVTDHGNVFGAYDFWKTAKAAGIKPIIGTEAYITPGT
ARGDKTRIKWGNGGEDDVSGAGAYTHMTLLSETTQGLHNLFRLSSKASLEGYYFKPRMDR
ELLSQYGKGLIATTGCPSGEVQTRLRLGQYDEAIKAASDFRDIFGKENYFAEIMDHGLGI
ERRIMDDLLRLAKQLDLPLVATNDLHYTHAHDATSHAALLCVQSGTTLDDPKRFKFDADE
FYLKSAAQMRQLFRDHPEACDNTLLIAERCDVSFDEGANYMPRFPVPEGETEESWFIKEV
DKGLHFRYPDGIPEDVRRQADYEVGVILQMGFPGYFLVVADFINWSKDNGIRVGPGRGSG
AGSMAAYAMRITDLDPLRHGLIFERFLNPDRVSMPDFDVDFDDRRRGEVIKYVTEKYGDE
RVAQIVTYGTIKAKQALKDSSRVLGFPFGMGEKLTKAMPPPIMGKDIPLTGIFDKSHPRY
KEAGDIRAVVETDHEAKTVFETALGLENLKRQWGVHAAGVIMSSEPLLDIIPIMKREQDG
QIVTQFDYPACEALGLIKMDFLGLRNLTIISDALDNIESNRGFVLDLEGLELDDQASYDL
LARGDTLGVFQLDGGPMRGLLRLMKPDNFEDISAVLALYRPGPMGADSHTNYALRKNGLQ
EITPIHPELEEPLKEILGGTYGLIIYQEQVMSIAQKVAGFSLGQADILRRAMGKKKKSEL
DKQYEGFRGGMHERGFSDAAVKSLWDILLPFSDYAFNKAHSAAYGVVSYWTAYLKAHYPA
EYMAALLTSVGDSKDKAAVYLNECRRMGIKVLPPDVNESIGFFAAVGDDIRFGLGAVRNV
GFNVVELIKQAREEKGRFTSFHDFLKKVPIPVANKRTLESLIKAGAFDSLGHTRRALYEI
HEESAEGAVRDKRAEAHGQVGFDFDNLWDEPQQALAVPERPEWSKRDKLAFEREMLGLYV
SDHPLAGLELQLAKHASISIAELLTGEAAADGETVTIAGLVTSVQHRTARNSGNPYGLIT
VEDFGGEITVMFLGKTYQEFSPALVSDSIVVIRARVGVRDDGVNLHASSMFQPDLGQSLG
SGPLMISVQEFRATTDVVAALGDVLIRHAGDTEVRLKLIKGSTARMFEVPYPVSVTADLY
GELKSLLGPSCLG
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgctggatggcgctgcgcgcgttaagcccctcatcgatgccgcggtagagcagcagatg
ccggcagtcgcggttaccgaccacggcaacgtcttcggggcatacgacttttggaagacc
gccaaggccgcgggaatcaagccgattatcggcaccgaggcgtacatcacccccggaacc
gcccgcggagacaagaccagaatcaagtggggcaacggcggagaagacgatgtctccggg
gccggtgcctacacacacatgaccctcctgagcgagacgacgcaggggctgcataacctt
tttcggctctcgtccaaggcatcgcttgaggggtactacttcaagccgcgcatggatcgc
gagttgctttcccagtatggcaagggcctcatcgccacgacgggctgcccgagcggcgag
gttcaaacgcgcctccgcctgggccagtatgacgaagcgattaaggccgcctccgatttt
cgcgacatcttcggcaaagagaactacttcgccgaaatcatggatcacgggctgggcatc
gagcgacgcatcatggacgacctgctcaggcttgccaaacagctcgaccttccgcttgtc
gcgaccaacgatctgcactacacccacgcccatgacgcgacgagccacgcggctctgctc
tgcgtgcagtcgggaacgacgcttgatgaccccaagcggttcaagtttgatgccgatgag
ttctatctcaagtcggccgcgcagatgcgccagctctttcgtgatcaccctgaggcctgc
gacaacactcttctcattgccgagcgctgcgatgtgtcgttcgacgagggcgccaactac
atgccccgcttcccggttcccgaaggagagaccgaggagtcctggttcatcaaagaggtc
gataagggcctgcactttcgctaccccgacggcattcctgaggatgtgcggcgtcaggcc
gactacgaggtaggggtcatcctgcagatgggcttccccgggtacttcctcgtggtcgcc
gacttcattaactggtcaaaagacaacgggattcgcgtcggccccggccgaggctccggt
gcgggttcgatggcggcctacgccatgcggatcaccgaccttgacccgctgcgccacggg
ctcatcttcgagcgcttcctgaaccccgaccgcgtctctatgcccgacttcgacgtcgac
ttcgacgatcgtcgccgcggcgaggtcatcaagtacgtgaccgaaaagtacggtgacgag
cgtgttgcccagatcgtcacctacggcacaatcaaggcaaagcaggcgctcaaggactca
tctcgagttctcgggtttccctttggcatgggggagaagctcacgaaggcgatgccgccg
cccatcatgggcaaggacatcccgctgacgggaatcttcgataagagccacccgcgctac
aaagaggccggcgacatccgggccgtcgttgaaaccgatcacgaagctaagacagttttc
gagaccgcgctcggcctcgaaaacctcaagcggcagtggggcgtgcacgctgcgggtgtg
atcatgtcgagcgaaccgctgctcgacatcatcccgatcatgaagcgtgagcaagacggc
cagatcgtcacgcagttcgactacccggcgtgcgaggcgctcggcctcatcaagatggac
ttcttggggctccgcaacctcacgatcatttcggatgctcttgacaacatcgagtcgaac
cgcgggttcgttctcgatctcgaaggccttgagctcgacgatcaggcctcctacgacttg
ctagcaaggggagacacgctcggcgtcttccagctcgatggcggccccatgcgcggcctc
cttcggttgatgaagcccgacaactttgaagacatttcggctgtgctggcgctttaccga
ccggggccgatgggtgcggattcgcacactaactacgccctgcgcaagaacgggcttcag
gagatcacgccgatccacccggagctggaggagcctctcaaggagatcctcggtggcacc
tatggcctcatcatctaccaagagcaggttatgtccattgcccagaaggtcgcagggttc
agcctgggtcaggccgatattctgcggcgggccatgggcaagaagaagaagtccgaactc
gataagcaatacgagggcttccgcggcggaatgcacgagcgcggcttctccgatgctgcc
gtcaagtcgctctgggacatcctgcttccgttctctgactacgccttcaacaaggcccac
tcggcggcatacggtgtcgtgtcgtattggactgcctacctcaaggcccattacccggcc
gagtacatggcggctcttctcacgagcgtcggcgattccaaggacaaagctgcggtctac
ctcaacgagtgccgccgcatgggaatcaaagttctgcccccggatgtcaatgagtcgatc
gggttcttcgccgcagtcggcgacgacatccggttcggtctcggtgccgtgcgcaacgtt
ggcttcaacgttgttgaactcatcaagcaggcccgcgaggagaaggggcgattcacctcg
ttccacgactttctcaagaaggtgccgattcccgttgccaacaaacgaacgctggaatcc
ctcatcaaggcgggcgcttttgactcgctcggtcacacgcgcagggcgctctatgagatt
cacgaggagtcggctgaaggtgcggtgcgagacaaacgcgcagaggcccatgggcaggtc
ggcttcgacttcgacaatttgtgggatgaacctcagcaggcgctggccgttcccgagcgg
ccagagtggtccaagcgggacaagctggcgttcgagcgcgagatgctgggtctctatgtt
tcggaccacccgctggccgggctcgagctgcaactggccaagcatgcgagtatttccatt
gccgaactactgacgggcgaggccgccgccgacggcgagaccgtcacaatcgctggccta
gtcacatccgtgcagcaccgcaccgctcgaaactccggcaacccgtacggcctcatcact
gtcgaggatttcggcggcgaaatcacggtcatgttcctgggcaagacctatcaggagttc
tctcccgcgctggtgagcgactccatcgtcgtcatccgtgcccgcgtaggggtgcgagac
gacggcgtcaatcttcacgcgtcaagcatgttccagcccgacctggggcagagtctcggc
tccgggccgctcatgatctcggtgcaggagttcagagcgacgacggatgttgtcgcagcg
ctcggcgatgtgcttatccggcatgcaggcgatacagaggtgcgcctcaagctcatcaag
ggcagcaccgcccgcatgttcgaggtgccgtatccggtgtcggtgacggctgatctctat
ggagaactcaagtcgctgctcgggccgtcctgcctcggctaa
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