Salinibacterium sp. dk2585: FVA74_02660
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Entry
FVA74_02660 CDS
T06151
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sald
Salinibacterium sp. dk2585
Pathway
sald03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sald00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FVA74_02660 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sald03021
]
FVA74_02660 (rpoC)
03400 DNA repair and recombination proteins [BR:
sald03400
]
FVA74_02660 (rpoC)
Enzymes [BR:
sald01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FVA74_02660 (rpoC)
Transcription machinery [BR:
sald03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FVA74_02660 (rpoC)
DNA repair and recombination proteins [BR:
sald03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FVA74_02660 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QEE60595
UniProt:
A0A5B9G0K5
LinkDB
All DBs
Position
571278..575132
Genome browser
AA seq
1284 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRRWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMVISVDEQGRHDDMPGLENEIRLEIAELEKQRDSRIADRLAKLETD
LAALEEEGAKADVKRRTKDGAEKEMSQTRKSFDEQIAQLERVWEDFRTLKVGDLKPEDSV
FHELQDRFGIYFEAHMGAEAIKKRLETFDLQAESDELHEQIANGKGQKKIRAIKRLKVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKSAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTIREGGEGEGR
AFSSVAEAILAFDQKSLHLNSKVRIRLIGDKFENGAELKETTLGRALFNEALPEDYPWVE
ALADKGQLSAIVNDLAERYPKVEVAATLDRIKDAGFYWATRSGVTVALSDILTPPTKRAI
IEGYEKQAAKVQSQFEKGLTTDAERRQELIEIWNKATAEVATAMQENMPSDNNINRMVTS
GARGNWMQVRQIAGMRGLVSNPKGEIIPRPILSSYREGLSVAEYFIATHGARKGLADTAL
RTADSGYLTRRLVDVSQDVIIREDDCGTSRGLDLVIAAPDANGVLVRDANVENSLYARSL
AEDAVDANGTVVAKAGDDVGDVLINTLIEAGITHAKVRSVLTCESAAGVCAVCYGRSLAT
GKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVTELFEARTPKGA
SPIAEAAGKITIEDTDRSRKLILTPDNGDEPIAYPVLKRATLLVEDGEHVELGQQLHVGA
VDPKEVLRVRGVRAVQQHLVDGVQGVYRSQGVPIHDKHIEVIVRQMLRKVTVVDHGDTDL
LPGELVDRSRYNELNRAALTEGRKTASARQEVMGITKASLATESWLSAASFQETTRVLTQ
AAMDGKSDPLLGLKENVIIGKLIPAGTGLPRYRNVSVEATEEAKAERYPNRIFSDDSSFS
EADLSFVDFDSFSSDGDFTPGTYN
NT seq
3855 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaaccacgttcgatgagcttcgtattggcctcgcgaccgctgacgacatc
cgtcgttggtcgcacggtgaggtgaagaagccggagacgatcaactaccgcacgctcaag
ccggagaaggatggcctcttcggtgagcagatcttcggaccctcccgcgactgggagtgc
tcgtgcggcaagtacaagcgcgtgcgcttcaagggcatcgtgtgtgagcgctgtggcgtg
gaggtcacgaagtcgtctgtgcgccgtgagcgcatgggccacatcgagctcgccgccccc
gtcacccacatctggtacttcaagggtgttccgagccgcctcggctacctgctcgacatg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatggtgatctcggtcgac
gagcagggccgtcacgacgacatgcccggcctggagaacgagatccgcctggagatcgcc
gagctcgagaagcagcgcgactcgcgcatcgccgaccgactcgcgaagcttgagaccgac
ctcgccgctcttgaagaagagggggcgaaggcggatgtcaagcgccgcaccaaggacggc
gccgagaaggagatgtcgcagacgcgcaagtccttcgacgagcagatcgcccagctcgag
cgcgtgtgggaggacttccgcaccctcaaggtcggcgacctgaagcctgaggacagtgtc
ttccacgagctgcaggaccgcttcggcatctacttcgaggcccacatgggcgccgaggcg
atcaagaagcgcctcgagaccttcgacctccaggctgagtccgacgagctgcacgagcag
atcgccaacggcaagggccagaagaagatccgcgccatcaagcgcctcaaggtcgtcaac
tcgttcctgcagaccggcaactcgcccgccgcgatggtgctcgatgtcgttccggtcatc
ccgccggagcttcgccccatggtgcagctcgacggtggccgtttcgcgacctccgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctccgtcgcctgctcgacctc
ggtgcccccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggtcgtcgtggtcgccccgtcacgggtaccggcaaccgcgccctcaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgttggtccgcagctcaagctgcaccag
tgtggtcttccgaagcagatggcgctcgagctgttcaagcccttcgtcatcaagcgcctc
atcgacctgagccacgcgcagaacatcaagagcgccaagcgcatggtggagcgttcgcgt
ccgcaggtgtgggatgtgctcgaggagatcatccgcgagcgtcccgtgctgctgaaccgc
gcacccacgcttcaccgcctcggcatccaggccttcgagccccagctggtcgagggcaag
gccatccagctccacccgctcgtctgtgccgcgttcaacgctgacttcgacggtgaccag
atggccgtgcacctgccgctgtcggtcgaggcccaggccgaggctcgcatcctgatgctc
gcctcgaacaacatcctgaagccctcggacggccgcccggtcaccctgcccacgcaggac
atgatcatcggcctgcaccacctcacgaccattcgcgagggtggcgagggcgagggccgt
gcgttctcctcggtcgctgaggcgatcctggcgttcgaccagaagtcgctgcacctcaac
tcgaaggtgcgcatccgtctgatcggcgacaagttcgagaacggtgccgagctcaaggag
acgaccctcggtcgcgccctcttcaacgaggcgctgccggaggactacccctgggtcgag
gctctcgccgacaagggccagctctccgcgatcgtcaacgacctcgctgagcgctacccc
aaggtggaggtcgcggcgacgctcgaccgaatcaaggacgccggtttctactgggcgacc
cgctcgggcgtgaccgtcgcgctctcggacatcctcacgccgcccacgaagcgcgcgatc
atcgagggctacgagaagcaggccgccaaggtgcagagccagtttgagaagggcctcacg
accgacgccgagcgtcgtcaggagctcatcgagatctggaacaaggccacggctgaggtt
gcgacggcgatgcaggagaacatgccgtctgacaacaacatcaaccgcatggtcacctct
ggtgctcgtggtaactggatgcaggtgcgtcagatcgccggtatgcgtggtctggtgtcg
aacccgaagggtgagatcatcccgcgtccgatcctctcgagctaccgtgagggcctctcg
gtcgccgagtacttcatcgcgacgcacggtgcgcgtaagggcctcgccgacacggcactc
cgtacggctgactccggttacctcacgcgtcgtctcgtcgatgtctcgcaggacgtcatc
atccgtgaagacgactgtggcacctcgcgcggcctcgacctcgtgatcgccgcccccgac
gccaacggcgtgctggtgcgcgacgcgaacgtcgagaactcgctctacgcccgcagcctc
gctgaggatgcggtcgacgcgaacggcaccgtcgtggcgaaggccggtgacgatgtcggt
gacgtgctcatcaacaccctcatcgaggcgggcatcacgcacgccaaggtgcgctccgtg
ctcacgtgtgagtccgccgcgggtgtctgtgctgtctgctacggccgttcgctcgcgacc
ggcaagctcgtcgacatcggtgaggccgtcggtatcatcgcggcccagtcgatcggtgag
cccggcacgcagctgacgatgcgtaccttccacaccggtggtgttgcatccgctgatgac
atcacgcagggtctgccccgcgtcaccgagctgttcgaggctcgtacccccaagggtgcg
tccccgatcgccgaggcggccggaaagatcacgatcgaggacacggatcgcagccgcaag
ctcatcctgacccccgacaacggcgacgagccgattgcctatcccgtgctcaagcgcgcc
acgctcctcgtggaggacggcgagcacgtcgagctcggccagcagctgcacgtcggtgcg
gttgaccccaaggaggtgctccgcgttcgcggtgtccgcgcggtgcagcagcacctcgtg
gacggcgtgcagggcgtgtaccgctcgcagggtgtgccgatccacgacaagcacatcgag
gttatcgtgcgccagatgctgcgcaaggtcacggtcgtcgaccacggcgacaccgacctt
ctcccgggtgagctggtcgaccgttcgcggtacaacgagctcaaccgtgccgcgctgacg
gagggtcgcaagaccgcctcggctcgccaggaggtcatgggtatcacgaaggcgtcgctc
gcgaccgagtcgtggctgtcggccgcgtcgttccaggagaccacgcgtgtgctcacgcag
gcggcaatggacggcaagtccgacccgctgctcggcctcaaggagaacgtgatcatcgga
aagctgatcccggcaggtacgggtcttccccgctaccgcaacgtctcggtcgaggcgacc
gaggaggcgaaggcggagcggtaccccaaccgcatcttctccgacgactcctcgttcagc
gaggccgacctgagcttcgtcgacttcgacagcttcagctcggacggcgacttcacgccc
ggtacatacaactag
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