Salinibacterium sp. dk2585: FVA74_10780
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Entry
FVA74_10780 CDS
T06151
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sald
Salinibacterium sp. dk2585
Brite
KEGG Orthology (KO) [BR:
sald00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sald03019
]
FVA74_10780 (hrpA)
Enzymes [BR:
sald01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FVA74_10780 (hrpA)
Messenger RNA biogenesis [BR:
sald03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FVA74_10780 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
AAA_22
AAA_19
T2SSE
AAA_30
SLFN-g3_helicase
WHD_HA2
FtsK_SpoIIIE
UvrD-helicase
nSTAND3
nSTAND_NTPase5
AAA_16
ResIII
ABC_tran
PhoH
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
QEE62000
LinkDB
All DBs
Position
2290715..2294665
Genome browser
AA seq
1316 aa
AA seq
DB search
MTAALPVTVTYPEDLPVSQRRDDISAAIRDHQVVIVAGATGSGKTTQLPKMLLELGYESI
GHTQPRRIAARTIAERIAEELGQEVGELVGYQVRFTDRTAKGTRIKLMTDGILLNEIHRD
RMLRKYDAIIIDEAHERSLTIDFLLGYLKQLLPKRPELKVIITSATIDPESFARHFAAAS
GDPAPIVEVSGRTYPVEIRYRPLAPDAATDDPDEQESSGTGDAIDLFDGINAAIDELGRE
GSGDILVFLSGENEIRDAEDAIRARNLPGVEVLPLYGRLSSADQHRVFQRSSSPGIRRRI
VLATNVAETSLTVPGIKYVIDAGTARISRYSTRAKIQRLPIEAISQASANQRSGRSGRTS
SGIAIRLYSQEDFEKRPEFTDPEILRTNLAAVILQMISLGLGAIEDFPFLQPPDSRGIKD
GLDLLRELGAVRVSTSPTGKAGSTGAPEITKIGRQLSQLPIDPRLARMVIESGRHGVTRE
VMAIVAGLSIQDPRERPLEKRPQADQLHARFVDKTSDFLTLLNLWNYLREQEEALSGNQF
RRLCKAEYLNYLRVREWADVYRQLTRMAKSLGLTVGEPSNDGVGIHKSLMAGLLSQLGVR
DDTVVPASGKAPKDRERPRNKKGEYIGARQVRFSVFPGSALAKKLPAEIMSAELVETSRL
FARMNAAVDLAWAEPLAGELVKRQYGEPHWEKKQGAAVAYERVTLYGVPIVARRRVQFAR
IDPVQSRELFIRHALIEGEWDVTRLDKRLTQFDRTNRALRKQLAEFEERTRRRDILLDDE
SVFDFYDRHIPAEVCTQRDFESWWKRTRPESPELLTMTRGDLLEESDAAPELLEADYPKW
WHQGEQRLKLTYRFEPGSKDDGVTVHVPLALLARLSPAGFDWQVPGLRADLVAALIKALP
KAIRRNVVPAGDWARKLLADLPEDLDVTEMPLTEYLAREIQRRTYTPVDVEDFELERVPD
HLLVTFAVIGEHGRELARSKNLTSLQAKLRDRARESVAKAHARASQPAPRPGAAAAASAP
SIERAGLTSWDFEELPRVRDTKLAGNVVRGYPALIDEGNSVAIRLMSTPAEQLREHRRGV
RRMLQLAIPAPTAYVQQHLTPAEILSLGASPYASTKELFADAMAATLDATIGQTTDASAL
PWRRADFEALRDRASAGIVDGLFTTVSLVARSLASARTAEKAIKAATSMALIAPLTDARE
QLGALVHPGFVGLAGVERLRRIPLYLDGITHRVGRLAENLGRDRVWMAEVQKATELYLKA
GGPLPLTREVVDDPERAHLVQVRWMLEELRISLFAQHLGTTGPVSVQRVQKALATR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgactgccgccctccccgtcaccgtcacgtacccggaagacctcccggtcagccagcgg
cgcgacgacatcagcgcggccatccgcgaccaccaggtcgtcatcgtcgcgggtgcgacc
ggatcgggcaagacgacgcagctgcccaagatgctgctcgagctcggctacgagtcgatc
gggcacacgcagccgcgccgcatcgccgcccgcaccatcgcggaacgcatcgccgaggaa
ctcgggcaagaggtcggcgagctcgtcggctaccaggtgcgcttcaccgaccgcaccgcc
aagggcacccgcatcaagctgatgaccgacggcatcctgctcaacgagattcaccgcgac
cggatgctccgcaagtacgacgccatcatcatcgacgaggcgcacgaacgcagcctcacg
atcgacttcctgctcggctacctcaagcagttgctgccgaagcggcccgagctcaaggtc
atcatcacctcggcgaccatcgaccccgagagcttcgcgcgccacttcgccgccgcgtcc
ggtgaccccgcccccatcgtcgaggtcagcgggcgcacctacccggtcgagatccggtac
cggccgctggccccggatgctgccaccgacgaccccgacgagcaggagagcagcggcacc
ggcgacgcgatcgacctgttcgacggcatcaacgccgcgatcgacgagctcggccgggag
ggcagcggcgacatcctcgtgttcctgagcggggagaacgagatccgcgatgcggaggac
gcaatccgggcgcggaacctgcccggcgtggaggtgctgccgctctacgggcggctgagt
tcggccgaccagcacagagtgttccagaggagctcgagcccgggcatccgtcgccgcatc
gtgctcgcgaccaacgtcgccgagacctccctgacggtgcccggcatcaaatacgtgatc
gacgcgggcaccgcccgcatcagccggtacagcacgcgggcgaagatccagcggctgccg
atcgaggcgatctcgcaggcatccgcgaaccagcgttcgggacgctcgggccgcaccagc
agcggcatcgcgatccgcctgtactcgcaggaggacttcgagaagcggcccgagttcacc
gacccggagatcctgcgcaccaaccttgccgcagtcatcctgcagatgatctcgctcggg
ctgggcgcgatcgaggacttccccttccttcagccgcccgactctcgcggcatcaaggac
gggctcgacctgctgcgcgagttgggggcggtgcgggtttcgacaagcccaaccggcaag
gcgggctcaaccggcgcacccgagatcaccaagatcggccgccagctctcgcagttgccg
atcgacccgcgcctcgcccgcatggtcatcgagtcgggccgccacggcgtcacgcgcgag
gtcatggcgatcgtcgccgggctgagcatccaggaccctcgcgagcgcccgctcgagaaa
cgcccgcaggccgaccagctgcacgcccgctttgtcgacaagacgagcgacttcctcacc
ctgctgaacctctggaactacctcagggagcaggaggaggcgctcagcggcaaccagttc
cgtcgcctgtgcaaggccgagtacctcaactacctgcgcgtgcgggagtgggcggatgtc
taccgacagctcacccggatggcgaagtcgctggggctcacggtcggtgaaccgagcaat
gacggggtcggcatccacaagtcgctcatggcggggctgctgagccagctcggcgtgcgc
gacgacaccgtggtgccggcatccggcaaagcccccaaggatcgtgagcgtccacgaaac
aagaagggcgaatacatcggggcgcggcaggtgcgcttctcagtgttcccaggctcggcg
ctcgccaagaagcttcccgccgagatcatgtcggccgagctcgtggagacgagtcgcctc
ttcgcccgcatgaacgccgccgtggacctggcctgggcggagccgctcgcaggtgagctc
gtcaagcggcagtacggcgaaccccactgggagaagaagcagggcgccgcggtcgcgtat
gaacgcgtcaccctctacggcgtgccaatcgtcgcgcgacgacgcgtgcagttcgcgcgc
atcgacccagtgcagtcccgggagctcttcatcaggcacgccctgatcgagggcgagtgg
gatgtcacgcggctcgacaagcgcctgacccagttcgaccgcaccaaccgggccctgcgc
aagcagctcgccgagttcgaggagcgcacccgccgccgcgacatcctgctcgatgacgag
tccgtcttcgacttctacgaccgtcacattcccgcagaggtatgcacgcagcgggacttc
gagtcgtggtggaagcgcacccgccccgagagccccgaactgctcacgatgacacgtggg
gacctgctcgaggagtccgacgccgcgcccgagttgctcgaggcggactaccccaagtgg
tggcatcagggcgagcagcgcctcaagctcacctaccgcttcgagcccggctccaaggac
gacggcgtcaccgtgcacgtgcccctcgccctgctggcgcgcctctcccccgcgggcttt
gactggcaggtgcccggcctgcgtgccgacctggtcgccgcgctgatcaaggcgctgccg
aaggccatccgccgcaatgtcgtgcccgcgggagattgggcacgcaagctcctcgctgac
ctccccgaagacctcgatgtcaccgagatgccgctgacggaatatcttgcgcgggagatc
caacgacgcacctacacgcccgtcgacgtcgaggacttcgaactcgaacgcgtgcccgat
cacctgctcgtgaccttcgccgtcatcggcgagcacggccgggaactcgcccgatcgaag
aacctcacctccctgcaggccaagctgcgcgaccgtgcgagggagagcgtcgcgaaggcc
cacgcgcgggcgtcgcaacccgcgcctcgtccgggtgcggcggccgcggcatccgccccg
tccatcgaacgcgcggggctcacctcctgggacttcgaggagctgccgcgcgtgcgagat
accaagctcgcgggcaatgtcgtgcgcggctacccggcgctcatcgacgagggcaattcg
gtcgctatccggctcatgagcacgcccgccgagcagctgcgcgagcatcgtcgcggcgtg
cgtcggatgctgcagctcgcgatccccgcgccgaccgcgtatgtgcagcagcacctgacc
ccggccgagatcctcagcctcggcgcgagcccctacgcatcaacgaaggagctcttcgcc
gacgccatggcggcgaccctcgacgcgaccatcggccagacgacggatgcttcagccctc
ccctggcgccgtgccgacttcgaggcactccgagaccgcgcctccgccggcatcgtcgac
gggctcttcaccacggtctcgctcgtcgccaggtcgctcgcctcggcgcgcaccgccgag
aaggccatcaaggcagcgacgagcatggcgctcatcgcgccgctcaccgacgcccgcgag
cagctcggcgccctcgtgcacccagggttcgtcggcctcgccggggtggagcgactccgt
cgcatcccgctgtacctcgatggcatcacgcaccgggtcggccgcctcgccgagaacctg
ggccgcgaccgcgtgtggatggccgaggtgcagaaggccaccgagctgtatctgaaggcc
ggcgggccactcccgctgacgcgtgaagtggtcgacgacccggagcgggcgcacctcgtg
caggtgcgctggatgcttgaggaactgcgcatcagcctcttcgcgcaacacctcggcacg
accggaccggtctcggtgcagcgggtgcagaaggcactcgcgacacgctga
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