Streptomyces alboflavus: SMD44_03588
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Entry
SMD44_03588 CDS
T05221
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
salf
Streptomyces alboflavus
Pathway
salf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMD44_03588 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salf03021
]
SMD44_03588 (rho)
03019 Messenger RNA biogenesis [BR:
salf03019
]
SMD44_03588 (rho)
Transcription machinery [BR:
salf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
SMD44_03588 (rho)
Messenger RNA biogenesis [BR:
salf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SMD44_03588 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
AAA_25
AAA_22
ATPase_2
NACHT
Spore_III_AA
AAA_28
Motif
Other DBs
NCBI-ProteinID:
ARX84152
UniProt:
A0A1Z1WCS1
LinkDB
All DBs
Position
complement(3957829..3958971)
Genome browser
AA seq
380 aa
AA seq
DB search
MTSQILHSGVLDIAPTRTNRAPNGQLRAAGCLPGPDDVLVPAALVRRLGLRTGDFVEGTC
GEKPRVLTDVARVNGRAPQAPGSRTEFADLTPLHPRERLRLERPGNAPGAFATRVIDLVA
PVGKGQRGLIVAPPRTGKTVLLKQLAAAVAENHPECHLMVVLLDERPEEVTDMRRSVRGE
VLASTFDRPPKAHIALAELAVERAKRLVEEGRDVVMLFDSLTRLCRAYNNSAASGGRTLS
GGVDAGSVQGPKRLFGAARLAEEGGSLTVLATALVDTGSRADDYYFEELKSTGNMELRLD
RTLADRRVFPAIDVTPSGTRREELLVPPTELTALRGLRRALHTRESSGGLEALLEHIRRT
PSNAVFLRQVRETVPGAVAA
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaccagccagatcctccacagcggtgtcctggacatcgcacccacccgtacgaaccgc
gcgcccaacgggcagctgcgcgccgccggttgcctccccggcccggacgacgtgctcgtc
ccggccgctctcgtccgccgactcggcctgcgcaccggcgacttcgtcgagggcacctgc
ggcgagaagccgcgcgtgctcaccgacgtcgcccgcgtgaacggccgcgcgccccaagcg
cccggctcccgaaccgagttcgccgacctcaccccgctgcacccgcgcgagcggctgcgc
ctcgaacggccgggcaacgcccccggcgccttcgcgacccgcgtcatcgacctcgtcgcg
cccgtcggcaaggggcagcgcggcctgatcgtcgcgccgccgcgcaccggcaagaccgtc
ctgctcaagcagctcgccgccgccgtcgccgagaaccaccccgagtgccacctcatggtc
gtcctcctggacgaacggcccgaggaggtcaccgacatgcggcgctccgtacgcggcgaa
gtcctcgcctccaccttcgaccggccgccgaaggcacacatcgccctcgccgaactcgcc
gtcgaacgcgccaagcggctcgtcgaggagggccgcgacgtcgtgatgctcttcgactcc
ctgacccgcctgtgccgcgcctacaacaactccgccgcgtccggcggccgcaccctcagc
ggcggcgtcgacgcgggctccgtccagggccccaagcgcctcttcggcgccgcccgcctg
gccgaggagggcggctccctgaccgtcctcgccaccgccctggtcgacaccggctcccgc
gccgacgactactacttcgaagagctcaagtccacgggcaacatggaactgcgcctggac
cgcaccctcgccgaccgccgcgtcttcccggccatcgacgtcaccccgtccggcacccgc
cgcgaggaactactcgtaccgcccacggagttgaccgccctgcgcggcctccgccgcgcc
ctccacacccgcgagtccagcggcggcctggaagccctcctcgaacacatccgccgaacc
cccagcaacgccgtcttcctgcgccaggtacgggaaacggtgccgggggccgtggcggcg
tga
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