Streptomyces alboflavus: SMD44_05219
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Entry
SMD44_05219 CDS
T05221
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
salf
Streptomyces alboflavus
Pathway
salf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SMD44_05219 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salf03021
]
SMD44_05219 (rpoC)
03400 DNA repair and recombination proteins [BR:
salf03400
]
SMD44_05219 (rpoC)
Enzymes [BR:
salf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SMD44_05219 (rpoC)
Transcription machinery [BR:
salf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SMD44_05219 (rpoC)
DNA repair and recombination proteins [BR:
salf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SMD44_05219 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Motif
Other DBs
NCBI-ProteinID:
ARX85750
UniProt:
A0A1Z1WH90
LinkDB
All DBs
Position
5656556..5660467
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIENRRDADLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEEREVKGE
GRSFGSTAEAIMAFDAKELSLQAKVDIRFPVGTFPPRGWTPPVDEDGDDALGGAYQQGDS
FRLRTTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAGF
YWATRSGVTVAISDVVVPEAKKAIVAGYEAQDEKVQKQYERGLITKEERTQELIAIWTKA
TNEVAEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASFR
EGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLKI
AVRGEDGVLRKTENVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALVANGVEEVKT
RSVLTCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAG
DDITQGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKLVVTPDDGSDETAFPISK
RARLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKH
IEIIIRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITKA
SLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRVE
PTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccggatcggtctggccaccgctgacgacatc
cgtcagtggagccacggcgaggtcaagaagcccgagaccatcaactaccgcaccctcaag
cccgaaaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgcgtccgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtcactcgcgccaaggtgcgtcgtgagcggatgggccacatcgagcttgccgcgccc
gtcacgcacatctggtacttcaagggcgtcccgtcgcgcctcggctacctcctcgacctc
gcgccgaaggacctcgagaaggtcatctacttcgccgcgtacatgatcacgttcgtggac
gaggagcgccgcacccgcgacctgccctccctggaggcgcacgtctccgtggagcgccag
cagatcgagaaccgccgcgacgccgacctcgaggcccgcgccaagaagctcgagaccgac
ctggccgagctggaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgaaggt
gccgagcgcgagatgaagcagctgcgcgaccgtgcgcagcgcgagatcgaccgtctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggacctcgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctcgatgggtgccgcggcg
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgcaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggttctggactgcgtgccggtcatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcgccttctcgacctc
ggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgtcgtggtcgcccggtcacgggccccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctcctcggcaag
cgtgtggactactccgcgcgttccgtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggccatggcgctcgagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtgtacgacgtcctcgaagaggtcatcgcggagcacccggttctcctgaaccgt
gcgcccaccctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtgcacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctcaagcccgccgacggccgccccgtcaccatgcccacccaggac
atggtgctcggcctcttcttcctcaccacggacgaagaggagcgcgaggtcaagggcgag
ggccggtccttcggctccacggccgaggcgatcatggcgttcgacgccaaggagctctcg
ctccaggcgaaggtcgacatccgcttcccggtgggcaccttcccgccccgcggctggacc
ccgccggtcgacgaggacggcgacgacgccctcggcggcgcgtaccagcagggcgacagc
ttccggctgcgcacgaccctgggccgcgcgctcttcaacgagctgctgcccgaggactac
ccgttcgtcgactactcggtgggcaagaagcagctctccgagatcgtcaacgacctggcc
gagcgctaccccaaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggcttc
tactgggcgacccgttccggtgtcaccgtggccatctccgacgtcgtggtccccgaggcc
aagaaggcgatcgtcgcgggctacgaggcgcaggacgagaaggtccagaagcagtacgag
cgcggtctgatcaccaaggaagagcgcacgcaggagctcatcgcgatctggaccaaggcg
accaacgaggtcgccgaggcgatgaacgcgaacttccccaagaccaaccccatcttcatg
atggttgactcgggtgcccgaggaaacatgatgcagatgcggcagatcgccggtatgcgt
ggtctggtgtcgaacgccaagaacgagacgatcccgcgcccgattaaggcttcgttccgc
gaaggcctctcggtgctcgagtacttcatctcgactcacggtgctcgtaagggtcttgcg
gacacggctctccgtaccgccgactccggttacctcacccgtcgtctggtcgacgtctcc
caggacgtcatcattcgcgaggaggactgtggcaccgagcgcggtctgaagctgaagatc
gcggtccgtggcgaggacggcgtgctccgcaagacggagaacgtcgagacgtctgtgtac
gcccgcatgctggccgaggacgtcgtcatcgacggcaaggtcatcgcgccggccaacgtc
gacctcggtgacgtgctcatcgacgccctggtcgccaacggcgtcgaggaggtcaagacc
cgctcggtcctgacctgtgagtccgcggtcggcacctgtgccttctgctacggccgttcg
ctcgccaccggcaagctggtcgacatcggtgaggcggtcggcatcatcgccgcccagtcc
atcggtgagcccggcacgcagctgacgatgcgtaccttccacaccggtggtgtggccggt
gacgacatcacccagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgccgaag
ggtgtcgccccgatctccgaggccgcgggccgcgtccgcatcgaggagaccgagaagacc
aagaagctcgtcgtcaccccggacgacggcagtgacgagacggcgttcccgatctcgaag
cgtgcccgtctcctggtgggcgagggcgaccacgtcgaggtgggccagaagctcaccgtg
ggtgccaccaacccgcacgacgtgctccggatcctcggccagcgcgccgtccaggtccac
ctggtcggagaggtccagaaggtctacaactcgcagggcgtgtcgatccacgacaagcac
atcgagatcatcatccggcagatgctgcgccgcgtgacgatcatcgagtccggcgacgcc
gagctgctgcccggcgagctcgtggagcgctcgaagttcgagaccgagaaccgtcgtgtg
gtcaccgagggcggtcaccccgcctccggccgtccgcagctgatgggtatcaccaaggcc
tcgctggcgacggagtcctggctgtcggccgcctccttccaggagacgacccgagtcctg
acggatgcggcgatcaacgccaagtccgacagcctcatcggcctcaaggagaacgtcatc
atcggtaagctcatcccggccggtacgggcctgtcccgctaccgcaacatccgggtcgag
ccgaccgaggaggccaaggccgcgatgtactcggccgtcggctacgacgacatcgactac
tcgcccttcgggacgggttcgggtcaggccgtgccgctggaggactacgactacggtccg
tacaaccagtaa
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