Shewanella algae: BS332_04195
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Entry
BS332_04195 CDS
T05622
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
salg
Shewanella algae
Pathway
salg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS332_04195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salg03019
]
BS332_04195
03009 Ribosome biogenesis [BR:
salg03009
]
BS332_04195
Enzymes [BR:
salg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BS332_04195
Messenger RNA biogenesis [BR:
salg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BS332_04195
Ribosome biogenesis [BR:
salg03009
]
Prokaryotic type
rRNA helicases
BS332_04195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
DUF7464
Motif
Other DBs
NCBI-ProteinID:
AXQ13644
LinkDB
All DBs
Position
930522..932324
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AA seq
600 aa
AA seq
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MSSSEKTFRELGLSEALLRALDELGYENPTPIQAASIAPLMAGQDILGQAQTGTGKTGAF
ALPLLNATDHNLNAPQILVLAPTRELAVQVAEAFSSYAKFMKGFHVLPIYGGQSMHQQLQ
ALRRGPQVVVGTPGRVMDHMRRGTLKLDSLKALVLDEADEMLKMGFIDDIEWILDHTPAE
RQLALFSATMPEQIKRVANKHLNNPATISIAASHTTVDSIEQRFVQVSQHNKLEALVRVL
EVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVDQLKSGKLDILI
ATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTHREMRMLRTI
ERATNSRISPMKVPSPETVAERRLSRLGDQVAATIANEELDFMKGAVAQLCQQLEVDTDI
LAAALLQQVQQERPLQLPPIQERQRDSRDDRSSRDDRGSREDRGSRRRDSRPVPGDLGKA
DSLKDNPDLQMCRYVLDVGREHGVGVGNIVGAIANEASIDSRYIGQIQLFDSLTTVDLPA
GMPKDVLAHLKKVRVCGKPINIREAGSQSFEGEQRPARRPRKHSGERRPDRKPRRRDDRS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgtcatccagtgaaaaaactttccgagaactcggcctctccgaggcattgctgcgtgct
ctagatgagctcggctacgagaacccgaccccaattcaagccgcgagtatcgcccccctg
atggcgggccaggatattcttggccaggcacagacaggtacaggtaaaaccggtgccttc
gctctgcctctgcttaatgcaacagatcataacctcaacgcaccgcaaattctggtgctg
gcaccgacccgcgaactggcggtacaggtagctgaagctttctcaagctatgccaaattc
atgaaaggtttccatgtactgcctatctatggcggtcaaagcatgcaccaacagctgcag
gcgctgcgtcgcggccctcaggtagtcgttggtactccaggccgagtcatggaccatatg
cgccgtggcaccctcaagctcgatagcctcaaagctctggtgctggatgaagccgatgaa
atgctgaaaatgggctttatcgacgatatcgagtggatcttggatcatactccggccgag
cgtcagctggcactgttctctgccactatgcctgagcagatcaagcgggttgccaacaag
cacctgaacaaccctgccaccatcagcattgccgccagccacaccacggttgactccatt
gaacagcgttttgtacaggtgtctcagcacaataaactggaagccctggtacgtgtgctc
gaagtggaaaacaccgaaggtatcatcatcttcgtgcgtacccgtaactcctgtgtggaa
ctggccgagaagctggaagcccgcggttacgcctcatcaccactgcacggtgatatgaat
caacaggcccgtgagcgcgccgtggatcaactcaagtccggtaagctggacattttgatt
gccaccgacgttgctgcccgtggtctggacgttgagcgtatcggtcacgtggtcaactat
gacatcccttacgataccgaagcctatgtacaccgtatcggtcgtaccggccgcgccggt
cgtaccgggatggcgattctgtttgtgactcacagagagatgcgcatgctgcgcaccatt
gagcgtgccaccaacagccgtatttctccaatgaaggttccaagccctgagactgtggcc
gagcgccgtctgtcacgtttgggcgatcaggtagctgccaccatagccaacgaagagctg
gactttatgaagggcgccgtggctcagctgtgtcagcagttggaagtggacacagatatt
ctggcggccgcactgctgcaacaagtacagcaggagcgtccgctgcagttgcctccgatc
caggagcgtcagcgtgacagccgtgatgatcgtagctcacgcgacgatcgtggttcacgg
gaagatcgtggttcgcgccgtcgtgactctcgtccggttcccggagatctcggcaaggcc
gattccctgaaggataacccggatctgcagatgtgccgttatgtactggatgtgggtcgt
gaacacggcgtgggtgtgggcaatatcgtgggtgccatcgccaatgaagccagcatagac
agccgttacataggccaaatccaactgtttgactctctgactacagtcgatctgcccgcc
ggcatgcctaaagacgtactggcacacctgaagaaagtacgggtatgtggcaaacctatc
aatatccgtgaagccggcagccagagcttcgaaggtgaacagcgcccggctcgtcgccct
cgcaagcactcgggcgaacgccgtccggatcgtaagccccgtcgtcgtgatgaccgcagc
tga
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