Shewanella algae: BS332_04780
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Entry
BS332_04780 CDS
T05622
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
salg
Shewanella algae
Pathway
salg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS332_04780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salg03019
]
BS332_04780
Enzymes [BR:
salg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BS332_04780
Messenger RNA biogenesis [BR:
salg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BS332_04780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXQ13736
UniProt:
A0A7T8EF59
LinkDB
All DBs
Position
complement(1057466..1058779)
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AA seq
437 aa
AA seq
DB search
MSETHLSQQKFAELPLHPEVIQALAENGFEYCTPIQALSLPVLLQGKDIAGQAQTGTGKT
LAFLVATFNHLLSTDIPAERQLNQPRAIIMAPTRELAIQIAKDATLLSKHTKLKVGIVYG
GEGYDAQRKVLDKGVDILIGTTGRIIDYVRQGVINLSAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPDAKDRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEELFYPSM
KDKIPLLLTLIEEDWPDKAIVFANTKHQCENLWGWLEGDGHRVGLLTGDVPQKKRLKILE
LFTKGDLDILVATDVAARGLHISDVSHVYNFDLPDDCEDYVHRIGRTGRAGAKGVSVSFA
CEEYALNLPAIEDYIKHSIPVTSYDAEALLDDIPAPVRIHRKHAGPRNARDRGQGRPQGA
HRSGGRPPRHDRTRRHS
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaacacatttatcccaacaaaaatttgccgaactgccactccatcctgaagta
attcaggcacttgcagaaaacggtttcgaatattgtacgcctattcaggcgctttccctg
ccggtacttttgcagggtaaagatatcgccggtcaggcgcagacaggtacgggcaagacc
ctggcctttctggtagcaacttttaaccacttactttccaccgacatccccgcagaacgc
caacttaatcagcccagagccatcatcatggcaccaacccgggaattggcgattcagata
gccaaagatgccaccttgctgtccaaacacaccaaactcaaggtggggattgtctatggc
ggcgaaggctatgatgcccagcgcaaagtgctggacaagggcgtggatatcctgattggt
actacaggacgcatcatagattacgtgcgtcaaggggttatcaacctcagcgctattcag
gccgtagtgttggatgaagcggatcgcatgttcgatctcggctttatcaaagacattcgc
ttcctgtttcgccgcatgccggatgccaaagacaggctcaacatgctgttctcggcaacc
ctgtcgatgaaggtgcaggagctggcttatgatcatatgaatgatccggtcaaagtcgaa
attgcaccggaagagaagacctcaaaaaacatcaaggaagagctgttctatccttcgatg
aaggacaagatcccactgttgcttaccctgattgaagaagattggccggataaggcgata
gtctttgccaacaccaagcatcagtgtgagaacctctggggctggctcgaaggtgatggt
cacagagtcggtctgctgaccggtgatgtgccgcagaagaaacgtcttaagatcctggag
ttgttcaccaagggtgatctggatattttggtggccacagacgtagcggcccgtggcctg
catatttctgatgtgtcccatgtctataacttcgacctgcctgatgactgtgaagactat
gttcaccgtatcggtcgtaccggccgtgccggtgccaaaggggtttcagtcagctttgcc
tgtgaagaatacgccctcaacctgccggctatcgaagattatatcaagcactcgattccg
gtaacttcttacgatgccgaagccttgctcgatgatattccagcaccggttcgtattcat
cgtaagcatgccggaccacgtaatgcccgtgatcgtggccagggacgtcctcagggagcc
catcgtagcggcggtcgtccgccccgtcacgacaggacccgcagacattcctga
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