Shewanella algae: BS332_06050
Help
Entry
BS332_06050 CDS
T05622
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
salg
Shewanella algae
Pathway
salg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BS332_06050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salg03021
]
BS332_06050
03400 DNA repair and recombination proteins [BR:
salg03400
]
BS332_06050
Enzymes [BR:
salg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BS332_06050
Transcription machinery [BR:
salg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BS332_06050
DNA repair and recombination proteins [BR:
salg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BS332_06050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AXQ13935
UniProt:
A0A379ZTG5
LinkDB
All DBs
Position
complement(1337271..1341482)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEVEQMREELPSINSETRRKKVTKRLKLVEAFYHSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYMSRERVNGRGEGMAFESVAEAEKAYRTG
AAELHARVKVRITETHIDENGERTQQRRIVDTTVGRALLSLILPAGMSFDLVNQNMGKKQ
ISRLLNTCYRQLGLKDTVIFADQLMYTGFQYATISGASVGINDMEIPEAKYKLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSSEVVINRDGEEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLIMKPLIEGGDVVEPLRERVL
GRVVAEDVYYPGSDEVLAPRNTLLDEAWCDKLEEYSVDEVKVRSVISCDTDFGVCAKCYG
RDLARGHLINQGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNAGNLKL
HNAKFVKNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLETLEGAEVTAGQTIANW
DPHTHPIITEVAGYVKFEQMIDGVTISRQTDELTGLSSIVVLDVAQRPSAGKEMRPMIRL
VDENGNDLTIPGTDVPAQYFLPSNAIVNLEDNAQISVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPAEGGNPYEEMIPKWRNLNVFE
GEKVERGEVIADGPESAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITEAGDSEFLEGEQVEVSRVKIANRELEEQGKIPAKFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHNNRNQARGEVATEA
PSISASEAEQNLADLLNLAGSQE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttgaaggcatc
aagatcggcctggcgtcgcctgatctgatccgttcttggtcatttggtgaagttaagaag
cctgaaaccatcaactaccgtacattcaagcctgagcgtgaaggcctgttctgtgcccgt
atctttggcccggtcaaagattacgagtgtctgtgcggtaagtacaagcgtctcaagcac
cgcggtgtgatctgtgagaagtgtggcgttgaagtgacccagaccaaagtacgtcgtgag
cgtatgggccacatcgaactggccagcccagttgcccacatctggttcctcaagtcactg
ccatcccgtatcggtctgatgctggacatgactctgcgtgatattgagcgggtactctac
ttcgaatcttatgtggttatcgagccaggcatgaccagcctggagcgcggtcaaatgctg
accgaagaaacctacctggatgcgctggaagagtatggtgacgagtttgaagccaagatg
ggtgccgaagcggttctggaactgctgcgcgctatcgatctggagaaagaagttgagcag
atgcgtgaagagctgccatctatcaactctgagacccgtcgcaagaaagtcaccaagcgt
ttgaagctggttgaggccttctaccattcaggcaacaagccagagtggatgatcctcaag
gtgctgccggttctgccacctgatctgcgtcctctggttccactggacggcggccgtttt
gcgacttcagatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgctggatctggctgctccggatatcatagttcgcaacgaaaagcgtatgctgcag
gaatctgttgatgccctgctggataacggtcgtcgcggtcgtgccattaccggttccaac
aagcgtcctctgaagtccttggccgacatgatcaagggtaagcaaggtcgtttccgtcaa
aacctgctgggtaagcgtgtagactactcaggccgttcggtaattaccgtgggcccaact
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcgctggaactgttcaaaccattc
atctacggcaagctggaaggtcgtggcctggccactaccatcaaagccgccaagaagatg
gttgagcgtgaagttgccgaggtttgggacgtactggatgaagtgatccgcgaacaccct
gtgatgctgaaccgtgcaccaacactgcaccgtttgggtatccaggcgttcgaacctgta
ctgatcgaaggtaaagcgattcaactgcacccactggtgtgtgcggcctataacgccgac
ttcgacggtgaccaaatggcggtacacgtgcctctgacgctggaagcccagctggaagcc
cgtgcgttgatgatgtcaaccaacaacattctgtcgcctgccaacggtgagccggttatc
actccttctcaggacgtggtactgggtctgtactacatgagccgtgaacgcgtaaatggc
cgcggtgaaggtatggcctttgagtctgttgccgaagccgagaaagcctatcgcactggt
gccgccgagctgcacgcccgggttaaagttcgtatcaccgaaactcatatcgatgagaac
ggtgagcgcacccagcagcgccgcattgtcgacaccacagtaggtcgtgctctgttgtca
ctgatcctgccagccggtatgtcttttgatctggttaaccagaacatgggcaagaagcag
atctcccgtttgctgaacacctgctaccgtcagctgggtctgaaagatactgttatcttt
gctgaccaactgatgtacacaggtttccaatacgccactatctctggtgcctctgtcggt
atcaacgatatggaaatcccggaagccaagtacaagctggttgccgacgcagaagccgaa
gttctggaaatccaggagcagttccagtctggtctggttactgccggtgagcgttacaac
aaggttatcgatatctgggccagcgccaacgagaaagtctccaaggcgatgatggaaaac
ctgtcttccgaagtggttatcaaccgcgacggtgaagaagagaaacaggcttccttcaac
agcatctacatgatggccgactcaggcgctcgtggtagtgccgctcagatccgtcagttg
gcgggtatgcgtggcctgatggccaagccagacggctctatcatcgaaacgcccatcgtg
gcgaacttccgtgaaggtctgaacgtactgcagtactttatttctactcacggtgctcgt
aagggtctggcggataccgcacttaagacagctaactcaggttacctgactcgtcgtctt
gtggatgttgcccaggatctggtcgttatcgaagatgactgtggtactcacgaaggtctg
atcatgaagccgctgattgagggtggtgacgtggttgagccgctgcgtgagcgggtactg
ggtcgtgttgttgccgaggatgtttactatcctggttcagacgaagtcctggcgccacgt
aacactctgctggatgaagcatggtgtgacaagctggaagagtacagtgttgacgaagtt
aaagttcgctctgtgatctcctgtgataccgacttcggtgtgtgtgccaagtgttacggt
cgtgacctggcccgaggccacctgattaaccaaggtgaagcaatcggggttgtcgctgct
cagtcaatcggtgagcctggtacacagctgacgatgcgtaccttccacatcggtggtgcg
gcatccagggcttctgcagaaaacaacgttcaggtgaagaacgccggtaacctgaagctg
cataacgccaagttcgttaagaacagcgatggcaagctggttatcgtatcgcgctcgtcc
gagctggcgattatcgatgaactgggccgtgagaaagagcgctacaaagtgccttacggt
actgtgctggaaacgctggaaggcgccgaagttacagctggccagactatcgctaactgg
gatccacatactcaccccatcatcactgaggtggcgggttatgtgaagtttgagcagatg
attgacggtgtcaccatctcgcgtcaaaccgacgagctgaccggtctgtcttctatcgtg
gtattggatgtggcccagcgcccaagcgccggcaaagaaatgcgtccaatgatccgtttg
gttgacgaaaacggtaatgacctgaccattcctggtaccgacgtacctgcgcagtacttc
ctgcccagcaatgcgatcgtaaacctggaagataatgctcagatcagcgtcggtgatgca
ctggctcgtattcctcaggaatcgtccaagactcgcgatattaccggtggtctgccaagg
gttgctgacctgttcgaagcccgtaagccaaaagagcctgcgattctggctgagatcagc
ggtaccatctccttcggtaaagagaccaaaggtaagcgtcgtctggttattacccctgct
gaaggcggtaacccatacgaagagatgatccctaaatggcgtaacctgaacgtgttcgaa
ggtgaaaaagtcgaacgcggtgaagtgatcgctgatggtccagagtctgctcacgatatt
ctgcgtctgcgcggtatccacaacgtagccaactacattgtgaatgaagtacaggacgta
tatcgtctgcagggtgtgaagattaacgacaagcacattgaggtgatcattcgccagatg
ctgcgtaagtgtctgatcactgaagccggtgattctgagttcctcgaaggggagcaggtt
gaagtgtcccgcgtcaagatcgctaaccgcgaactggaagagcagggcaagattccggcc
aagttcgaacgcgaactgctgggtatcaccaaagcctctctggcgactgagtccttcatc
tctgcggcctcgttccaggaaaccactcgcgtactgaccgaagcggcagtaggcggtaag
agtgataacctgcgcggtctgaaagagaacgtgatcgtaggtcgtctgatcccggccggt
accggttatgcttaccacaacaaccgtaaccaggctcgtggtgaagtagcgactgaagca
cctagcatcagcgccagcgaagccgaacagaacctggccgatctgttgaacctggcaggt
agtcaggaataa
DBGET
integrated database retrieval system
