Shewanella algae: BS332_07645
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Entry
BS332_07645 CDS
T05622
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
salg
Shewanella algae
Pathway
salg03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BS332_07645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salg03400
]
BS332_07645
Enzymes [BR:
salg01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BS332_07645
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BS332_07645
DNA repair and recombination proteins [BR:
salg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BS332_07645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF1631
Motif
Other DBs
NCBI-ProteinID:
AXQ14185
LinkDB
All DBs
Position
complement(1677517..1678332)
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AA seq
271 aa
AA seq
DB search
MPELPEVEVTRLGVAPYLVDQTVSNLIVRNPSLRWPVPETARNIIGQTIRAVRRRAKYLL
LDTDAGTCIVHLGMSGSLRILPRSTPAEKHDHIDLELENGRVLRFNDPRRFGAWLWCELP
ETAHPLLAKLGPEPLTDAFNVEQLHAALKGKKKAIKLCLMDNAIVVGVGNIYANEALFAA
GVHPQAEAGKVDKERLTVLVAEIKLILAQAIKQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGETCTQCGHMLSEIRLGQRTTVFCSLCQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattgccggaagtggaagtgacccgcctcggggttgcgccgtatcttgttgat
cagaccgtcagtaaccttatcgttcgtaatccttcgctgcgttggccggtaccggaaacg
gcccgcaatatcataggacagaccattagagccgtgcgccgccgcgccaaatacctgctg
ctggatacagatgccggtacctgcatagtgcatctggggatgtccggcagcctgcggatt
ttgccccgtagcacaccggctgagaagcacgatcatatagatttggaattggaaaacggc
cgggtgctgaggttcaacgatccgcgcagattcggtgcctggctctggtgcgagttgccg
gaaacggctcatccgctgctggccaaactggggcccgaacctttaacggatgccttcaat
gtcgagcaactacacgcggcgctcaaaggcaagaagaaggcgataaaactctgtctgatg
gacaatgccattgtggtgggtgtcggtaatatctatgccaacgaagccctgtttgccgcc
ggggtccacccgcaggccgaggccggtaaagtggataaagagcggctgacagtgctggtc
gccgagataaagctgatcctggcccaggcaatcaagcaggggggcaccacactgaaagac
tttaccaatgccgaaggtaaaccgggttactttgcccagaagctgcatgtctatggccgc
ggtggggaaacctgtacccaatgtggccatatgttatccgaaatacgcctgggacagcgc
actacagtgttttgcagcctgtgccaaacgcgctga
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