Shewanella algae: BS332_12160
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Entry
BS332_12160 CDS
T05622
Name
(GenBank) poly(A) polymerase
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
salg
Shewanella algae
Pathway
salg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS332_12160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salg03019
]
BS332_12160
Enzymes [BR:
salg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
BS332_12160
Messenger RNA biogenesis [BR:
salg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BS332_12160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Gad2
DUF6932
Motif
Other DBs
NCBI-ProteinID:
AXQ14937
LinkDB
All DBs
Position
complement(2674531..2675949)
Genome browser
AA seq
472 aa
AA seq
DB search
MFRRISQFCKQLFDDGQTTKAQQEGNTDTGLSLEVIPRDGHSISRRQISENALKVLYRLH
KSGFNAYLVGGGVRDLLLGLEPKDFDVVTNATPEEIKKLFRNCRLVGRRFRLAHIVFGRD
VIEVATFRGHHGNSEEKISKVNSAGRLLRDNVYGDIDEDAERRDFTVNALYYNIADYSIR
SYGGGIHDLKARTLRLIGDPETRYREDPVRMLRAVRFATKLGMSIEKRTAAPIKSLAPLL
KDIPAARMYEEVLKLFFAGKALNNYQMMREYQLFAPIFPLVESLLRDDPKGPAARLLSEM
MHNTDVRVGEDKPVTPAFFYAALLWYPLQNRAQDIALESGLSPYDAFFAAMGDVLEQQCR
SVSIPRRFSTPARDIWQLQMRFERSQGGRAFKLMEHPKFRAAYDLLLLRANAEGGNLAKQ
ASWWQQFVESDDEQKQQLVRSGSKSNGSRNRNANQRRRRKPRRPSEKPQAAE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atttttcgccgtatcagtcagttttgtaagcagttgtttgacgatggtcagacaaccaag
gctcaacaagaaggcaacacagacacaggtttgagcctggaggttatcccgcgcgatggc
cacagcatttcccgcagacagattagcgagaatgcgctcaaggttttgtaccgcctgcat
aagtctggctttaacgcctatctggttggtggcggcgtacgcgatctgctgctgggactg
gagccgaaagactttgacgtggtcaccaatgccactccggaagagatcaagaagctgttt
cgcaactgccgcctggttggccgtcgtttccgcctggcccatatcgtctttggccgggat
gttattgaagtggcgaccttccgcggccaccacggcaacagcgaagagaagatttccaag
gtcaattcggccggacgactgctgcgcgacaatgtttatggtgacatagatgaagacgcc
gagcgccgcgactttaccgtcaacgccctctattacaatattgccgactactccattcgc
agctatggcggcggtattcatgatcttaaggccagaaccctacgactgattggcgatccc
gagacccgttatcgggaagacccggtgcgtatgctgcgggccgtgcgctttgccaccaag
cttgggatgtccatcgaaaaacgcactgcggccccgatcaagagtttggctccgctgctg
aaagatattccggctgcgcgtatgtatgaagaagtgctcaagctgtttttcgccggtaag
gcgctgaacaactatcagatgatgcgcgaatatcaactgtttgcgcccattttccctctg
gtggaaagcctgctgcgggacgaccccaagggcccggctgccagactgctgagcgaaatg
atgcacaacacagatgtgcgcgttggtgaagacaagcctgtgactccggccttcttctat
gcagcactcctttggtatccgctgcaaaaccgcgcccaggatatcgccttggagagcggt
ctcagcccctatgatgccttctttgccgccatgggcgatgtgctcgagcaacagtgccgc
tcggtaagcattccccgccgcttcagcactccggcgcgggatatctggcagttacagatg
cgctttgaacgctctcaagggggccgcgccttcaaactgatggaacatcccaagttccgc
gccgcctacgatctcttgctgctcagagccaatgccgaaggcggcaatctggccaagcag
gccagttggtggcaacagtttgtcgagtctgatgacgagcagaagcaacaactggtgcgc
agcggcagtaagtccaacggcagccgcaaccgtaacgccaatcaacgccggcgccgcaag
cctcgtcgccctagcgaaaaaccacaggcggccgagtaa
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