Shewanella algae: BS332_12205
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Entry
BS332_12205 CDS
T05622
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
salg
Shewanella algae
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salg03019
]
BS332_12205
Enzymes [BR:
salg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BS332_12205
Messenger RNA biogenesis [BR:
salg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BS332_12205
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXQ14945
LinkDB
All DBs
Position
2684721..2687273
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AA seq
850 aa
AA seq
DB search
MNDLPIQSLLPQLRQTLATCRQVILEAPTGAGKSTALPLALLDWPEIDGKILMLEPRRVA
ARAIAGFLARQRGQALGQEVGFRVRGESQVSGNTRLEIITEGVLTRMIQQDPELKGVAMI
IFDEIHERHLSTDLGLALALEVQASLRDDLHLLAMSATLEGLPLQTLMPDAKLLVSEGRS
YPVTIAYSAASAQRRSGSGSGSGMAPWLEHMGRQLLALLDPQQASALGVSEAQQQGSILA
FLPGQGEIQRLKHYLQSRVAANVRICPLYGSLSAKEQDAAIAPANAGERKLVLSTNLAES
SLTIEGITLVVDSGYKRQASFNPRSGVTRLGLKRISQASATQRAGRAGRTSAGFCLRLWG
QEEHGRLPQADEPEILHADLLSMALDAACWGVRSLSDLPLLTPPARANEAVAWQLLQSLQ
LVDPQRKLTAHGRAAYALGAQPRLAHMLLRAQSLGQARGDPELAGLACLLAALLEARSLA
GNGADIMDKLSQATQGLEARQVGNWLRRLGLNGKAADFLKLANRADCALLLALAFPDRIA
KARGIEGYQLANGSGVVLDAGDSLSGCEFLVVADYQETEGRSAGRIYLAAELPAGLLENE
LAFLCTWQQQAGWNESKGRFFAERQLRLGEIVLKREAEKEADPKLRAQAIMALLRSKGLA
LLNMDEDVRQLQFRLALARSKDPSLFPDSSDPALLDSLEEWLEPFLSDIKQLKGIMALDI
KQLLLNRLEWQAQQTLNEWLPSHWKMATGTRAPIRYDAGGRALLSVRLQEALGMAESPRL
LQGELTVTMELLSPAQRPLALTADLASFWQGPYVEVKKEMRGRYPKHLWPDDPANTLPTK
FTKKKTLNIQ
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgacttacccattcaatccctgttgcctcaactgcgccaaaccttggccacttgt
cggcaagttatcctcgaggcgcctaccggagccggtaaatccaccgcgctgcccttggca
ctgctcgactggccggaaatcgacggcaagatcctcatgttggagccccggcgggttgca
gcgcgggccatcgccggctttttggcgcgccaaagagggcaggcactggggcaagaggtg
gggttcagggttcgcggtgagagtcaggtcagcggcaacacccgactcgagatcatcacc
gagggggtactgacccgcatgatccagcaggaccctgagctcaagggcgttgccatgatc
attttcgatgagatccatgagcgccatctgagcacagatctcggtctggcgctggcactg
gaagtgcaggcctcattgcgggacgatttacacttgctggccatgtcggcaacgctcgaa
ggcttgccgttacaaaccttgatgccggatgccaagctgcttgtcagtgagggccgcagc
taccctgtgactatcgcctacagcgccgcttcggcgcagaggcgcagcggttcgggttcc
ggctctggcatggcaccttggcttgaacatatggggcggcagttgctggcgctgctggat
cctcagcaggccagtgctttgggggttagcgaagcgcagcaacagggctcgatactcgcc
ttcctgccgggacagggggaaattcagcgcctcaagcactatctgcaatccagagttgca
gccaatgtgcgcatttgtcctctctacggctcattgagtgcaaaagagcaggatgcggcg
attgccccggccaatgccggtgagcgtaagctggtactgtccaccaacctggcggaatcc
agtctgaccatagaggggattactctggtggtggacagtggttacaagcgccaggccagt
ttcaacccccgcagcggcgtgacccgtttgggactcaagcgtatcagccaggcatcggcc
actcaaagagccgggcgggctgggcgcaccagtgcgggtttttgcttaaggctttggggc
caggaggagcacggccgcttgccgcaggcggatgaaccggaaatcttgcatgccgacttg
ctctccatggccctggatgcggcctgctggggtgtgcgcagcctcagtgacttgccttta
ctgacgccaccggccagagccaatgaggcggtggcctggcagctgttgcagtcgctgcaa
ttggtagacccgcaacgtaagcttaccgcccatggccgcgcggcctatgcactgggggcg
cagccacggttggcgcacatgctgctccgggcgcagagtttggggcaggcgcgcggcgac
cccgaactagccggtctggcttgtctgctggctgccttattggaggccagaagccttgcg
ggcaacggcgccgacatcatggataaactttctcaggccactcaaggccttgaagccaga
caagtcggcaactggctcagacgcttagggcttaatggcaaggcggcggattttctgaaa
ttggcgaatcgtgccgattgcgccctgttgttggcgttggcatttcctgacaggatagcc
aaggcaagaggcatcgagggttaccagttggccaatggcagcggcgtggtgctcgatgcc
ggtgacagcctcagcggctgcgagtttctggtggtggccgactatcaggaaaccgagggc
cgcagcgccggccgtatctacctggcggccgaattaccggcggggttgctggaaaatgag
ctggcctttctctgtacctggcaacagcaggctggctggaatgagtccaagggacgtttc
tttgccgagcgccaactgcgtctgggggagatagtgctcaagcgggaggccgagaaagag
gcggatcccaagctgagggctcaggcgattatggcgctgctgcgcagtaaaggcttggcg
ctgctcaatatggatgaggatgtcaggcagctccagttcaggctggcactggcaagatcc
aaagatccgagcctatttccggacagcagcgatccggcgctgctggattctctcgaggag
tggttggagccgtttttgagcgatatcaagcagctaaagggaataatggcattggatatc
aagcagctgctgctcaatcgcctcgagtggcaggcgcaacagacactgaatgaatggctg
ccgagccattggaaaatggccacgggcacccgggcaccgatccgctatgatgccggcggc
agggcgctgctgagtgtgcgtctgcaggaagcgctgggcatggccgaaagcccgcggctg
ctgcaaggggagttgaccgtaaccatggaactcttgtctccggcgcagcgccctttggcg
ctgacggccgatctggccagtttttggcaagggccctatgtcgaggtgaaaaaagagatg
cgtgggcgctaccctaaacacctgtggcccgacgacccggccaatactttgccgactaaa
ttcaccaagaaaaagaccttgaatatccagtag
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