Shewanella algae: BS332_13425
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Entry
BS332_13425 CDS
T05622
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
salg
Shewanella algae
Pathway
salg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS332_13425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salg03019
]
BS332_13425
Enzymes [BR:
salg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BS332_13425
Messenger RNA biogenesis [BR:
salg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BS332_13425
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
AAA_22
SPOR
P-loop_SecA
Helicase_C_4
Motif
Other DBs
NCBI-ProteinID:
AXQ15141
LinkDB
All DBs
Position
2952099..2953367
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AA seq
422 aa
AA seq
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MQFSETQLPGALLEAVAQCGYRELTAVQQQVLPAALAGRDIMASAQTGTGKTAAFGLPLL
AALIDEWQQQGLAEPEYGAAPRVLILTPTRELAQQVATQLGKYAAHTPFRILAIFGGANF
NPQRKAIAAGIEVLVATPGRLFDHLSQDHLRLDKVKALVLDEADRMLDLGFLPDIERLGR
YLPDGHQTMLFSATFPEAVKRLGHKLLDKPEWFEVDKESRTQAQIQQKVYPVDYRRKAEL
LAELIGRNNWQQVLAFVSTKESAEQLQQELKLDGIKSACFHGDKTQGARSRALAQFIDGE
VRVLVATDVAARGLDIPALPRVINLELPSQADDYIHRIGRTGRAGRSGEAISLVSPAEEQ
KLAEIEALLGYKLPREVLPGYEKGAPLPERYLQPIEKPRPAKTHRGHKPGRKGPLPKGPR
RR
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttctgaaacccagctgccgggagcgctgctcgaagccgttgcccagtgcggc
tatcgtgagttgacggcggtgcagcagcaggtactgccggcggcgctggccggacgggat
attatggcttcggcccagacaggcacaggcaaaaccgcggcctttggcttgccgctgttg
gccgccttgattgacgagtggcagcaacaggggctcgctgagccagaatatggcgccgct
cccagagtgcttatcctgacaccaacccgcgagctggcgcaacaagtggcgactcagctg
ggcaaatacgccgcccatactccatttcgcattttggccattttcggcggcgccaacttc
aaccctcaacgcaaggcgatagcggccggtattgaggtgctggtggcgacgccggggcgg
ctgttcgatcacctgagccaagatcatctcaggctggataaggttaaggccctggtgctg
gatgaggccgaccgcatgttggacctggggtttttgccggatattgagcgtctggggcgc
tatctgccagatgggcatcagaccatgttgttttcggcaaccttccccgaggcggtcaag
cgcctcgggcacaagctgctcgataagccagaatggtttgaagtggataaagagagccgc
actcaggcgcagatccagcaaaaggtgtatccggtggattatcgtcgtaaagccgagttg
cttgccgagcttattggtcgcaacaactggcaacaggtgttggcctttgtcagtaccaag
gagagtgccgagcagttgcagcaagagctgaaactcgacggcatcaagagcgcctgtttt
cacggtgacaagactcagggcgcccgcagccgcgctctggcgcagttcattgatggagaa
gttagggtattggtggcaaccgatgtcgcggcccgaggcctggatattcctgccttgcca
agggttatcaatctcgagctgccatcccaggctgatgactatattcatcgcattggccgt
accggcagagcagggcgcagcggcgaagccatctctttggtgagcccggccgaagagcaa
aaactggctgaaatagaagccctgctcggttacaagctgccaagagaagttctgccgggt
tacgagaagggcgcgccgttgccggagcgctatttacagccaatagagaagccccgacct
gccaagactcacaggggccataaacccggccgcaaggggccgcttcccaaaggcccaaga
cgcagataa
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