Shewanella algae: BS332_17245
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Entry
BS332_17245 CDS
T05622
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
salg
Shewanella algae
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salg03019
]
BS332_17245
Enzymes [BR:
salg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BS332_17245
Messenger RNA biogenesis [BR:
salg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BS332_17245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
SLFN-g3_helicase
AAA_22
NACHT
T2SSE
nSTAND3
AAA_25
ResIII
AAA_30
HA2_N
PhoH
Motif
Other DBs
NCBI-ProteinID:
AXQ15741
LinkDB
All DBs
Position
3803219..3807094
Genome browser
AA seq
1291 aa
AA seq
DB search
MNAKLHPLSREYLDLCFQADAARIRRSLFRLKKSPDTEAKQQKLAELSEAALQAYERAQQ
RLADRPVIEYPDELPVSQKRDEIASAIINHQVVIVAGETGSGKTTQLSKICLDLGLGSRG
LIGHTQPRRLAARSVASRVADELKTELGQAVGFKVRFADAVSQDSYIKLMTDGILLAELA
SDKWLSQYDCLIIDEAHERSLNIDFILGYLKQILQKRPDLKLIITSATIDVERFSRHFDN
APVVEVSGRTYPVETRYRPLLQDDEADLDLMDGIFAAVDELCREGPGDILIFMNGEREIR
DTADQLKKRNLRDTEILPLYARLSYGEQSKVFKPHPGRRIVLATNVAETSLTVPGIRYVI
DPGTARISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYDEQDFINRPAFT
DPEILRTNLASVILQMLAIGLGDIEGFPFIQPPDPRHIRDGFLLLEELQAVNKHKGALKL
TPLGRDLAKIPVDPRLARMVLEANKLGCLHEVMVIVAGLSIQDPRERPHEKKQAADEAHR
RFADKDSDFVAWLNLWQYLKEQQKSLSSSQFRKQVKAEYLAYLRIREWQDLYAQLRQSVH
DLKWRLNSQAAEYEPLHQALLSGLLSHIGFKDKDNEYLGARNRRFFVFPGSPLAKKGPKW
IMAAELTETSRLFARTCARIDPVWLESLAAHLVKKQHNEPHFEAKQGSVIALENQVLYGL
TIVNRRRVQFGPLEPVKAREIFIRSALAEGELRCNEAFFKANQALLEEVEDLEHKSRRRD
ILVDTDALFAFYDERIPQGIYNQPKFNTWWKQARRETPELLNFSRELLMQRDDTHVSALD
FPDSWQQGNLSLKLSYHFEPAAEDDGVSVLIPVALLNQLDETDFDWQVPGLREEKCVALI
KSLPKPLRRNFVPAPDYARACVQAMEPFAQPLLPSLCKQLLRMSGTRVNPEDFDLNAIAD
HLKMNFKVEDDKGKLLAQSRDLDSLKASLQGQVNQAIRKVADKGIEQNALTEWSFGDLPK
EYQSRKGSYEVKAFPALVDAGDTVSIKLFDDEQQALSQHRQGLRKLLLINIPSPVKHLQQ
ALPNKAKLAMYFNPFGQVQILIDDIIAAAIQQLLDEQQLDVRSADDFAKAKEIVRAELNE
TAAAIALKVEQILTLHQKIRKRLKGKISLDIAFAMSDIQSQLDALVFKGFVEASGWRRLG
DLIRYLKAIELRLDKLPVDPNRDRLHLHSIHNAETEFKAALAKVPRSQAVPEALAEVRWM
LEEYRVSCFAQSLGTAYPISEKRILNQLQQF
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgctaagctgcacccactctcccgcgaatatctggatctctgctttcaggccgat
gcggcgcgcattcgccgcagcctgttccgcttgaaaaaaagccccgatacagaagccaaa
cagcaaaaactcgccgagctcagtgaagccgcgctgcaggcttatgaaagggcgcagcaa
aggctggcagacagacctgtcatcgagtatccggatgagctgccggtgtcacaaaagcgc
gatgaaatcgcctcggccatcatcaatcatcaggtggtgatagtggccggtgagaccggc
tcgggcaagaccactcagctgtccaaaatctgcctcgacttggggcttggcagccgtggt
ctgattggccacactcagcccaggcggctggcggcccgcagtgtggccagccgggttgcc
gatgaactcaagacagagctgggtcaggcggtgggttttaaggttcgtttcgccgatgcg
gtttcccaggactcctatatcaagttgatgacagacggtatcctgctggcagaactggca
tcggataaatggctcagtcagtatgattgcctcatcatagacgaggcccatgagcgcagt
ctcaacatcgactttattctgggttatctgaagcaaattttgcaaaagcgcccggatctc
aagttgatcatcacctcggccaccatagatgtggagcgcttttccaggcattttgacaat
gcgcccgtggtggaagtgtccggccgcacctatccggtggaaacccgctatcgccccctg
ttgcaggatgacgaagccgacttggatctgatggacggcatctttgccgcagtcgatgaa
ctctgtcgcgaaggcccgggggacattctgattttcatgaacggcgagcgcgaaatccgc
gataccgccgatcagctgaaaaagcgtaacctgcgcgataccgagatcttgccgctttat
gcccgtttgtcatacggcgagcagtccaaggtattcaagccgcatccagggcggcgcatt
gtattggccaccaacgtggccgaaacctcgctgactgtgccagggatccgctatgttatc
gacccgggtactgccagaataagtcgctacagctatcgcaccaaggtgcagcgtttgccg
attgagcccatctcccaggccagtgccaatcaacgccagggacgttgcggccgggttgga
ccggggatctgtattcgcctctatgacgaacaggactttatcaatcggccggcgtttacc
gatcctgaaattctgcgcaccaacctggcatccgtgatcctgcagatgctggccataggc
ctgggtgacattgagggcttccccttcattcagccaccggatccgcgccatattcgcgac
ggttttctgctgctcgaagagttgcaggcggtgaacaagcacaaaggggcgctgaaactg
accccgctcgggcgcgatctggcgaagatcccggtcgatccccgcttggcccgcatggtg
cttgaggccaacaagctgggttgtctgcatgaggtgatggtgattgtcgccgggttatcg
attcaggatccccgcgagcggccacatgagaagaaacaggccgccgatgaggcccatcgc
cgttttgccgataaagactcagactttgttgcctggctaaatctgtggcagtacctcaaa
gagcaacagaagagtctgtcatccagccagttccgcaagcaggtgaaggccgagtatctg
gcctatttgcgtattcgcgaatggcaggatctctatgcccagctgcgtcagagtgtgcac
gacctcaagtggcgcctcaatagtcaggccgccgaatatgagccactgcatcaggcgctg
ctctcggggctgctgagccatatcggcttcaaggataaagacaacgagtatctgggggcc
cgcaaccggcgcttctttgtgtttcccggctcgccgctggccaagaagggccccaagtgg
attatggcggccgagcttaccgaaacatcacgcctgttcgcccgtacctgcgcccgtatc
gatcctgtatggctcgagtctctggcggcgcatctggtcaagaagcagcacaacgagccc
catttcgaagccaaacagggcagtgtgatcgccctggaaaatcaggtgctctatggcctc
accatagtcaaccgccgccgggtacagtttggcccgctggagccggttaaggctcgggaa
atctttattcgctcggctctggccgagggtgagctgcgctgcaatgaagccttcttcaag
gccaaccaggcgttgctcgaagaggtggaagatctcgaacataagtcgcggcggcgcgac
attctggtggatacagacgccttgttcgccttctacgatgaacgcattccacaagggata
tacaaccagcccaaattcaacacctggtggaaacaggccaggagagagacccctgagctg
ctcaatttcagccgcgaactcttgatgcaaagggatgacacccatgtatcggcattggac
ttccccgacagctggcagcagggcaatctcagcctcaagctgagttaccattttgaaccg
gcggccgaggatgacggcgtctctgtgcttattccggtggcgctgctcaatcagttggat
gaaaccgattttgactggcaggtaccggggctcagggaggagaagtgtgttgccctgatc
aagtccttgcccaaaccgctgcggcgcaattttgtgccggcgccggattatgcccgcgcc
tgtgtgcaggcgatggaaccttttgcccagcctttgttgccctccctgtgcaaacagctg
ctgagaatgagtggcacccgtgtcaatccggaggatttcgatctcaacgccattgccgac
catctgaagatgaacttcaaggtggaggacgataagggcaagctcttggcccagagccgg
gatctcgacagcctcaaggcatcattgcaggggcaggtgaaccaggcgatacgcaaggtt
gccgacaagggcatagagcaaaacgccctgaccgaatggagctttggcgacctgccgaaa
gaatatcaaagccgcaaaggcagctatgaggtgaaggcgttccccgccttggtggatgcc
ggtgatacagtttctatcaaattatttgatgacgaacagcaggcactttcccaacacaga
caagggctgagaaagctgctgcttatcaatattccatcgccggtgaaacatctacagcag
gccttgcccaacaaggccaaactggcgatgtatttcaatccattcggccaggtgcagata
ctgatagatgacattattgccgcggcaattcagcagcttttggatgagcagcagttggat
gtccgaagcgccgatgactttgccaaagccaaggagatcgtcagggccgagctcaatgaa
accgcagcggccatcgcccttaaggtggagcagattttgaccttgcaccagaagatccgt
aagcgtctcaagggcaaaatcagcctggatatcgcctttgccatgagtgatattcaaagc
caattggacgctctggtgttcaagggatttgttgaagcttccggttggcgccgtcttggc
gatctgatccgctatctcaaggcgattgagctgcgcctggacaaactgccggtggatccc
aaccgtgaccgtttgcacctgcacagcattcacaacgccgagacagagttcaaggccgcg
cttgccaaggtgccgcgtagccaggcggtaccggaggcgttggccgaggtgcgctggatg
ctggaagagtacagggtcagctgttttgcccagagtctgggcactgcttatccgatatcg
gaaaagcgcatcctcaaccagttgcagcagttttaa
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