Shewanella algae: BS332_21060
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Entry
BS332_21060 CDS
T05622
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
salg
Shewanella algae
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salg03032
]
BS332_21060
03400 DNA repair and recombination proteins [BR:
salg03400
]
BS332_21060
Enzymes [BR:
salg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BS332_21060
DNA replication proteins [BR:
salg03032
]
Prokaryotic type
DNA Topoisomerases
BS332_21060
DNA repair and recombination proteins [BR:
salg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BS332_21060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF2399
DehI
Motif
Other DBs
NCBI-ProteinID:
AXQ16335
LinkDB
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Position
complement(4642184..4644823)
Genome browser
AA seq
879 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSSADANGKAKSAAEVRKMSP
EEKAKYKKVKEKKALVARMGVDPEHGWKANYQILPGKEKVVKELQALADSADEIYLATDL
DREGEAIAWHLQQVIGGDNSRYKRVVFNEITKSAIQDAFSKPSDLDNNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVEREAEIKAFVPEEFWDLHAQLATATDD
ALTMQVVKQNGKAFEPVNQAQALAAVAALQSASYEVIGREDKATQSKPSAPFITSTLQQA
ASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDNVRAMIAKEFGDKYLPDAP
IRYGSKEGAQEAHEAIRPSDVSVHAASLTDMERDAQRLYELIWRQFVACQMTPAQYDATR
LTVKAGEFELKASGRTLKFDGWTRVQSAVKRKNEDEVTLPYLAEGDKLDLKQLDPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSERLV
ENFANLMNYDFTAGMEQTLDNVAQGQLDWKQVLDGFYKDFTKQLQHAELPPEEGGMRPNQ
MVLTDIACPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTLNLTPGEEAISESEDAET
EALRAKHRCGICGTAMDSYLLDETRKLHVCGNNPACPGYEVEKGQFKLKGYEGPVIECDR
CGSDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPIPLPELKCSKSDAHFVLR
DGASGIFLAASTFPRSRETRAPLVSELVEYRELLWPKYQFLADAPVKDDEGNPTLVKFSR
KTKEQYVASEVDGKATGWVAHYRDGKWFAENSKKKKAKS
NT seq
2640 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctagttattgtcgaatcgccggccaaagccaagactatcaacaaatat
cttggtaaagaattcatcgttaagtcgagtgtgggtcacatacgtgacttgccgacttcc
tcctccgccgacgccaacggcaaggcaaaaagcgcagccgaagtgcgtaaaatgtcgcct
gaagaaaaggccaagtacaagaaggtgaaagagaaaaaggctctggttgcccgtatgggg
gttgatcctgagcacggctggaaagccaactaccaaattctgcctggtaaggagaaggtg
gtaaaagagctgcaagcgctggccgattccgccgatgaaatctatctcgcgacggatttg
gatagagaaggggaagcgattgcctggcatctgcagcaggtgataggcggcgacaattcc
cgttataagcgggtggtgttcaacgagatcaccaagagtgccatccaggatgccttcagc
aaacccagcgatctcgacaacaatatggtcaacgctcagcaggctcgacgtttcctcgat
cgggtagtgggctttatggtttcgccgctgctgtggaaaaaggttgccagaggcctctct
gccggacgggttcagtcggtagccgtgcgtttggtggttgagcgggaagccgaaattaaa
gccttcgtgcctgaagagttctgggatctgcacgctcagttggcgaccgctaccgatgat
gctctgaccatgcaagtggtcaagcaaaacggcaaggcatttgagccggtcaatcaagcc
caggcgctggccgctgtggcagcgctgcaatcggccagttatgaggtgatcggccgcgaa
gacaaggccactcaaagcaagcccagcgctccctttattacctcgacactgcagcaggcc
gccagtacccgtctcggttttggggtgaagaagaccatgatgatggcccagcgtctctat
gaggcgggtcatatcacttatatgcgtaccgactctaccaatctgagccaggaagcgctg
gataacgtcagagccatgattgccaaagagttcggcgacaagtacctgccggatgcgcct
attcgttatggcagcaaagagggcgcgcaagaggctcacgaagcgattcgaccttcagat
gtctctgtacacgctgcgtcactgaccgacatggagcgtgacgctcagcggctctatgag
cttatttggcgccagtttgttgcctgtcagatgactccggctcaatatgatgccactcga
ctcacggtcaaggccggtgagtttgagctgaaggccagtggtcgcaccctgaaattcgat
ggttggacccgggtacaatctgcggtcaaacgcaagaatgaagatgaagtcaccctgcca
tatctggcggagggcgataaactggatctgaaacaactggatcccaaacagcactttacc
aagccaccggcgcgctacagcgaagcctctctggttaaagaattggaaaagcgcggcata
ggtcgcccttccacttatgccactattatttccaccatccaggatcgtggttatgtgaaa
gtggaaaaccgccgtttctacgccgagaagatgggtgaaattgtcagtgaacgtctggtg
gaaaactttgccaacctgatgaactatgactttaccgccggaatggagcagaccctggat
aacgttgctcaggggcaactcgactggaaacaggtgcttgatggcttctacaaagacttc
accaagcagttgcaacatgccgagctgccaccggaagagggcggtatgcgccccaaccag
atggtgctgacagacatagcctgtcctacttgtgggcgccccatgggaattcgcacaggt
actacgggtgtgttcctgggatgttcaggttatgagctgccacccaaagagcgttgtaag
accacgctgaacctgactccgggtgaagaagcgatcagcgagagcgaagatgccgaaacc
gaggcgctcagggccaagcatcgctgtggtatctgtggcaccgccatggacagctacctg
ttggatgaaacccgcaagttgcatgtttgcggtaacaatcctgcctgtcctggatatgaa
gtcgagaagggacagttcaaactcaagggttacgaaggcccggtcattgaatgtgaccgt
tgcggcagcgatatggagctgaagaacggccgtttcggtaagtattttggctgcaccaac
agcgagtgcaagaatacccgtaaactgctcaagaatggcgaagtggcgccacccaaggaa
gatcctattccattgcccgagctcaagtgcagcaagtcagacgctcatttcgtcttgcgt
gatggtgcctcgggtatcttcctggccgccagcacgttcccgagatcccgtgaaactcgg
gcaccactggtctccgagctggtggagtaccgcgagttgctgtggcccaaatatcagttc
ctggccgatgcgccggtgaaagatgatgaaggtaatccgactctggtgaagttcagccgc
aagactaaagagcagtatgtggccagcgaagttgatggtaaggcaaccggctgggtcgcc
cactatcgcgatggcaagtggtttgctgaaaacagcaagaaaaagaaagccaagagctaa
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