Shewanella algae: BS332_21580
Help
Entry
BS332_21580 CDS
T05622
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
salg
Shewanella algae
Pathway
salg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BS332_21580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salg03019
]
BS332_21580
Enzymes [BR:
salg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BS332_21580
Messenger RNA biogenesis [BR:
salg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BS332_21580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SLFN-g3_helicase
NAT10_TcmA_helicase
AAA_11
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AXQ16417
LinkDB
All DBs
Position
complement(4747171..4748394)
Genome browser
AA seq
407 aa
AA seq
DB search
MEFAAFSLPEPLLTNLAGLGFSKATQVQAEAIPLVLAGSDLLVQAQTGTGKTAAFALPLL
ARLMPATTERAVKPAAPKALVLVPTRELAQQVFDNIKSYAKGCELKIAIAYGGVPLDGQL
KNFKDGVDILVATPGRLLDHLKKRSLRLDKVEILVFDEADRMLDMGFEDEISALMKKMAK
QRQTLLFSATFNDNIWRLAKILLQFPKVLELQASEQGSSIKERLIELDSERKAAAVAALC
RRHYWRQVLLFSRTKEGADKLVCELSAEGLAASALHSDLSQAQREQTYQAFKAGECRLLV
ATDVAARGLDVAALPCVINLELPFKREDYLHRIGRTGRAGMEGLAITLFSRDDERLLEEL
EAMLDRRLPREWLPGFEPDLNRSFDAPRNQSKAAQKQRARKRALGKR
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggaatttgccgctttttctctgcccgaaccgctactgaccaatctggccggactgggt
tttagcaaggcaacccaagtgcaggcagaggccattcctttggtgctcgccggcagcgat
ctcctggtgcaggcacagacgggcacagggaaaaccgccgcctttgccttgccgttgctg
gcgcgtttaatgcccgccacgactgagagagccgtaaaacccgcagcgcccaaggctctg
gtgctggtgcctacccgggagttggcgcagcaggttttcgataacattaaaagctatgcc
aagggctgcgagctgaagattgccattgcctatggcggtgtgccactcgatgggcagcta
aagaacttcaaggatggcgtcgatatcttggtcgccacgcccgggcgcctgctggatcac
cttaaaaagcgcagtctcaggctggataaggttgagatcctggtgtttgatgaggccgac
cgcatgttggatatggggtttgaagatgagatctcggcgctgatgaaaaagatggccaaa
cagcgccagactctgctgttttccgccaccttcaacgacaacatctggcgtctggccaag
attttgctgcagtttcccaaagtgttggagctgcaagcatcagagcagggtagcagtatc
aaggagcgattgattgagctcgatagcgagcgtaaggccgccgccgttgccgccctttgt
cgccggcactactggcgtcaggtgttgctgttcagccgcaccaaggagggggccgacaaa
ctggtctgtgagctcagtgccgagggcttggccgccagtgcgctgcactcagatctgagt
caggctcagcgcgagcagacctatcaggcgttcaaggcgggtgaatgtcgtttactggtg
gccacagatgttgccgccagaggcctggatgtagcggccttgccttgcgttatcaatctg
gagctgccgttcaagcgcgaagattatctgcaccgcattggccgcaccggccgcgccggc
atggaagggctcgccatcaccctattcagtcgtgacgacgagcgcctcctcgaagagctg
gaagccatgctcgacagacgcctccccagagaatggctgcccgggtttgagccggatctc
aaccgcagttttgacgcaccgagaaaccagagtaaagccgcccaaaagcagcgggcccgc
aagagagcgcttggtaaaagataa
DBGET
integrated database retrieval system
