Saliniradius amylolyticus: HMF8227_00560
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Entry
HMF8227_00560 CDS
T05447
Symbol
deaD
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
salh
Saliniradius amylolyticus
Pathway
salh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMF8227_00560 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salh03019
]
HMF8227_00560 (deaD)
03009 Ribosome biogenesis [BR:
salh03009
]
HMF8227_00560 (deaD)
Enzymes [BR:
salh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMF8227_00560 (deaD)
Messenger RNA biogenesis [BR:
salh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMF8227_00560 (deaD)
Ribosome biogenesis [BR:
salh03009
]
Prokaryotic type
rRNA helicases
HMF8227_00560 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AWL11056
UniProt:
A0A2S2E0A3
LinkDB
All DBs
Position
complement(556134..557870)
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AA seq
578 aa
AA seq
DB search
MTSNTLSFQDLNLPAALLQALEKVGYETPSPIQAESIPLLLDGHDLLGQAQTGTGKTAAF
ALPFLSKIDPKANHVQLLILAPTRELAIQVAEACHTYAAFDKGIRVLPIYGGQSYSHQIK
TLKKGVQVVVGTPGRVIDHIKRGTLKLNQVSSLVLDEADEMLRMGFIDDVEWILSHAPEE
RQTALFSATMPEQIRRIIHRYLKEPKTVKIAAKVSTATTIRQRFCQVAPRHKMEALTRIL
EVEDFDGVIIFVRTKTATVELAEKLAARGYDAEALNGDIPQNARERVVDRLKKGQVDILV
ATDVVARGLDVERISHVINFDIPYDTESYVHRIGRTGRAGREGDAILLMSHREKRLLRAI
EKATKQAIEPMTLPSVTELNEQRVKRFKDKVLATLEDDRLEAILPVIEALKEETEAEPEV
LMAALAQMAAGKEPLVLSEKDVADINDRSSDREGRAGARDQGDRKPKRRNAAPPEEGMQR
YRIEVGHSHGAKPGNIVGAIANEADIDSQYIGAIQINDTYSTVDLPAGMPPEVKAILSKA
RVAGQKLAIREWTDKPPKHNVKGKDKGKRPPRSRSKAK
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcaacaccctcagttttcaggacttaaacctgcccgcagccttacttcaggcc
ttagaaaaagtcggctacgaaacaccatctcctattcaggcagaaagtattcccctacta
ctggatggtcatgatctcctgggacaggcgcaaaccggtaccggcaagactgccgccttt
gccttgccatttttgtcgaagatcgaccctaaggctaaccatgttcaactcttgatcctg
gcgcctacccgtgaactggcgattcaggtggctgaagcctgtcacacctacgccgccttc
gataaaggtattcgggtactgcccatttatggtggtcaatcctattctcaccaaatcaag
acgctgaaaaaaggcgttcaggtagtagtaggcacaccgggacgggttattgaccatatc
aagcggggcacccttaaattaaatcaggtctccagcctggtgcttgatgaagccgacgaa
atgctgcgtatgggctttatcgacgatgtagagtggattctcagccatgcgcctgaggag
cgccagaccgcgctgttctctgccaccatgcctgagcagatccgccgaatcattcaccgt
tatctgaaagagcccaagacggttaagatcgccgccaaggtcagtaccgctaccactatc
cgtcaacgtttctgtcaggtggcaccgcgtcataagatggaagccctgacccgaatttta
gaggtagaggattttgacggtgtcattatctttgtgcgcactaagaccgcaaccgtcgag
ctggcagaaaagctagcggcccggggctatgatgccgaagccctgaatggcgatatcccc
cagaatgctcgtgagcgggtggtggatcgcctgaagaaaggtcaggtagatattcttgtg
gccaccgatgtagtcgccagaggcctggatgtggagcgcatcagccatgtgatcaacttc
gacattccttatgataccgaatcctatgtgcatcgtatcggacgtaccggtcgggctggc
cgtgaaggtgacgccatcctgctgatgtcccaccgcgagaaacgtcttctgcgagccatc
gaaaaggccaccaagcaggcgattgagcctatgactctgccttcggtcaccgaactcaat
gaacagcgggtcaagcgctttaaagacaaggtgttggcaacgctggaagatgaccgtctg
gaagccatactgcccgttatcgaggcgcttaaagaagaaaccgaagccgagcctgaggtc
cttatggccgctctggcgcaaatggccgccggtaaggagccgttggtactgtcggaaaaa
gatgtggccgatatcaatgatcgctcttctgaccgggaaggccgagctggtgcccgtgat
caaggggacagaaagcccaagcgccgtaatgcggctccaccagaagaaggcatgcaacgt
taccgcatcgaagtgggccacagtcatggcgccaagccgggtaacatcgtcggtgccatc
gccaatgaagcagacatcgacagccagtacatcggcgccatccagatcaacgacacctat
tccaccgtggacctacctgcaggtatgccgccggaggtgaaggccatactcagcaaggcc
cgggttgccggtcagaagctggccatccgtgaatggactgacaaaccacccaagcataac
gtgaaaggcaaggacaaaggcaaacggccacctcgctctcgctctaaggctaaatag
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