Saliniradius amylolyticus: HMF8227_01153
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Entry
HMF8227_01153 CDS
T05447
Symbol
recB
Name
(GenBank) Exodeoxyribonuclease V
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
salh
Saliniradius amylolyticus
Pathway
salh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HMF8227_01153 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salh03400
]
HMF8227_01153 (recB)
Enzymes [BR:
salh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HMF8227_01153 (recB)
DNA repair and recombination proteins [BR:
salh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMF8227_01153 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_11
ResIII
PDDEXK_1
AAA_22
AAA_25
DEAD
E3_UbLigase_R4
Motif
Other DBs
NCBI-ProteinID:
AWL11634
UniProt:
A0A2S2E1W9
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All DBs
Position
1214191..1217790
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AA seq
1199 aa
AA seq
DB search
MKALDIPAFALDRSALIEASAGTGKTFTIAHLYLRLLLGHQCDARTVDQILVVTFTNAAT
AELKDRIRQLIMQAVQALFASETDGVLGEILSDVEDKSLACQRLILAARQLDEASIYTIH
GFCQRMLVQHAFESGSAYQQQLITDESELLQHAANDFWRRHISPTDKDSLTQILAIWATP
AELTKTIGPLLSRAITLEAPLTTASQVRGTLEDVVSQLKRWWLDKRLPEHFAKADFKKGR
KLARPELIEAFTAYCQSDALLPDGELGFEQLQSAKVYEAEKKASKVLTSLDFSLVDEALH
LHQQWLQGLKAELLEKAVAEVRDQLRRDKRRQALLSPDDLLSQLGEALISEQGEALAAAI
REQYPKAMIDEFQDTDPVQFEIFRRIYPADNHQNSLILIGDPKQAIYGFRGADIYTYIEA
KHWVDAAQHYTLDSNWRSRPSLVEGVNRLFSQSQYGFLFDKDIPFSPVKAKNRQHWLEID
GQRSEGMTFWHWQTASASTFRAMAPTVAQQCANTLAGLLNQAQTGQTAIVDASGQRSPLT
PGDCCVLVNNRNEAQVLAQTFKRVGIDSVFLSRESVFDTPLALELFYLLQALAHPSDEQA
VKAALLTELVGLSASEFEHWLSHDQRWQQLLWEFGRWHRVWRQQGIASALNQALDFLSAF
ERQMARPDGVRRITDLRHLSELLQQQSQQLEGESQLLRWYQHRLQAPEAQDNVQQLRLET
DANLVQIVTVHSSKGLEYPVVFYPFSCNSQPLREAFYHDATGQLKLAGNDEPEGVKQAEY
EQLAEQLRLLYVALTRAALACFVGVWNPAHRGKQSVLKQVAVGKLVLKDGDEPDDACLSQ
RFTELADGDTLHYLPLELDPEAEPTYYRAYSDEQQGLACAQLSRSLMRQWRVTSYSALSQ
TQVADEPDSQEEAPVPGLDEGRDKVLSTPETESVTPFSFQRGAQAGSFLHDILEHSLPLS
EPGRIRDVVLKMAKKYAILPTKWLSQIEEGADTLSPEAAEVESQVGMLCHWIMSVMRHPV
GALDNVSLSEIGQLKAEMEFYLPLEQVGASQFNRVLNQHEPMLNANYQFERLSGMLKGYI
DLTVVHEGRCFVADYKSNYLGDTLADYQGEALHEAMLEHDYYLQAILYVLALHRWLKVYW
PGYDFDTHMGGSLYLFLRGMDGQTKDSGVLHYQPPKALILALDDLFDGQTPQVEQLSLC
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcgcttgatattccggcgtttgcccttgaccgttcggcgctcatcgaagccagt
gcaggcactggtaagacctttaccattgcgcatttgtatttgagactgctgctcgggcat
cagtgcgatgccaggactgtggatcagatcctggtagtgacctttactaacgcagccacc
gccgagttaaaagatcgcattcgccagcttatcatgcaggcggtccaggccctgttcgcg
tcagaaacggatggtgtgttgggagagattctatccgatgttgaggataagtcgctggcc
tgtcagcggctcatactggcggcccgacagctggatgaggccagtatttatactattcac
ggtttttgccagcgtatgttggtgcagcacgcctttgaaagtggttcggcctatcagcaa
cagttgatcaccgacgaatcagagctgttgcagcacgcggcgaatgacttctggcgtcgt
catattagtcctactgataaggacagcctgacgcagattctggccatttgggcgacgcct
gcagagcttaccaagaccatcgggccgttattgtcccgagccataacgttggaagcgcct
ctgaccacggcttcacaggtgagagggacattagaagacgtcgtcagtcagctcaagcgc
tggtggctggataaacgtctgccagagcattttgccaaggccgattttaagaaaggtcgt
aagctggcccgtcccgaactgatcgaagccttcacagcctattgccagtctgatgccttg
ctgcccgacggagagctcggctttgagcagttgcagtcggcgaaggtgtatgaagcggaa
aaaaaggccagtaaggttttaacctcgctggactttagtctggtggatgaggctttgcac
ttgcatcagcagtggttacagggcttaaaggcagagcttctggaaaaggccgtagccgaa
gtgcgtgaccagctgcgccgggacaagcgtcgccaggcactgctcagtcccgatgatctg
ctcagtcaattgggtgaggcactgatatccgaacagggcgaagcactggctgcggcgatc
cgtgagcaataccccaaagccatgatcgatgagtttcaggatactgatccggtgcagttt
gagatcttccgtcgcatttatccggctgataatcaccaaaacagcctgatcctgattggt
gatcccaagcaggccatctacggttttcgcggcgccgatatctatacctacattgaagcc
aagcattgggtggatgccgcccagcactatacgctggatagcaactggcgcagccgtccg
tcgctggtggaaggggtcaatcgactattctcacaaagtcagtacggctttctgttcgat
aaggacattccctttagtccggtaaaggctaagaatcggcagcattggctggaaatcgac
ggtcagcgtagcgaggggatgaccttctggcactggcaaacagcgtcggcatctaccttt
cgcgctatggcgcctaccgtggcccagcagtgcgccaatactctggccgggttgctgaat
caggcacagaccgggcaaaccgctattgtggatgcttcgggacagcgcagccctctgaca
ccgggggattgctgcgtgttagtgaataaccgcaacgaagcgcaagtgctggcgcaaacc
ttcaagcgtgtcggtatcgacagcgtgtttttatcccgcgagagcgtgtttgataccccg
ctggcgttggaattattttacttgttacaggcactggcacaccccagtgacgaacaggca
gtgaaagccgcgttgttaactgaattggtgggcctcagcgcgagtgagtttgaacactgg
ttgagccatgaccagcgttggcaacagttactgtgggagtttggccgttggcacagagtc
tggcggcaacagggcattgccagtgctctgaatcaggcactggattttttatcggcgttt
gagcgccagatggcccgccctgacggagtacggcggatcaccgacttgcgccatctcagc
gagctattgcaacaacaaagccaacagctagagggagaaagtcaattgttgcgctggtat
cagcaccgtctgcaggctcccgaagcgcaggataatgttcaacagttaaggctggaaacc
gatgccaacctggttcaaatcgttaccgtgcacagctccaaagggctggaatacccggtg
gtgttctatccctttagttgcaatagccaaccgctcagggaggccttttatcatgatgcc
actgggcagttgaaactggccggaaacgatgagccggagggtgtgaaacaggccgagtac
gaacagctggcggagcagttgaggctgctttatgtggcgctgacccgcgccgccttagcc
tgttttgtgggggtgtggaatcctgcccaccgtggcaaacagtcggtgctcaagcaagtg
gcggtgggcaagctggtattaaaagacggtgatgagccggatgatgcctgcctgagtcag
cgattcacggaattggctgacggtgacacgctgcattatctgcccctggaattggaccca
gaggcagaaccgacttattaccgggcttacagtgacgagcagcaagggctcgcctgtgcc
cagttaagtcgcagtttgatgcgccagtggcgcgtaaccagctactcggctttaagccag
actcaggttgccgatgagccagattcgcaggaggaagcgccggtgcccggactggatgaa
ggcagagacaaggtcctgtccactcctgagactgagtcagtcacgccttttagctttcag
cgcggtgctcaggcgggctctttcttgcatgatattctggagcatagcctgccactgagt
gagcccggtagaatccgggatgtagtgcttaagatggcgaaaaaatacgctatcttgccg
acaaaatggctgagtcagatagaggaaggcgctgatacactgtcaccggaggccgcggag
gtagaaagccaggtcgggatgttgtgtcactggataatgtcggtgatgcgccatcctgtc
ggggcgctggataatgtcagcttgtcggagatcggacagcttaaagcagaaatggagttt
tatctgccgctggagcaggtgggcgccagtcagtttaaccgggtcttgaatcagcacgag
cccatgctaaacgctaactatcagtttgagcggctctctggcatgttaaaaggctacatc
gatcttaccgttgtccatgaggggcgctgctttgtggccgactataagtccaactaccta
ggcgatactctcgccgattatcagggagaggcgctgcacgaggctatgttggaacacgat
tattatctgcaggcaattctgtacgtgctggcgctgcatcgctggctgaaggtctactgg
cccggctacgactttgatactcatatgggcggcagtctgtatctgtttttacggggaatg
gacggtcagacgaaagattccggtgtcttacattatcagccccccaaggcattgatcctg
gctctggatgacttattcgacgggcaaacccctcaggtggagcaattaagtttatgttag
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