Saliniradius amylolyticus: HMF8227_01366
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Entry
HMF8227_01366 CDS
T05447
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
salh
Saliniradius amylolyticus
Pathway
salh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
salh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HMF8227_01366 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salh03400
]
HMF8227_01366 (sbcB)
Enzymes [BR:
salh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HMF8227_01366 (sbcB)
DNA repair and recombination proteins [BR:
salh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HMF8227_01366 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HMF8227_01366 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HMF8227_01366 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AWL11844
UniProt:
A0A2S2E2H9
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All DBs
Position
complement(1460543..1461985)
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AA seq
480 aa
AA seq
DB search
MPVATHQPSLFWHDYETWGANPVKDVPAQFAGVRTDLELNIIEEPVEWFCQIPNDYLPHP
QACLITGITPQQSLRDGMNEAEFARHIEHQFSRPDTCVVGYNNLRFDDEVTRHLLYRNFY
EPYAREWQNGNSRWDIIDMVRACYALRPEGIEWPEREDGSPSFKLEHLTQANGLGHDRAH
DAMSDVYATIDMARLIKQKQPKLYHYLFGLRKKSAVKALIDYHNLTPLVHVSSKLPAVNG
CTSWIVPVCPHPINRNAIICLNLALDPSPLFDLDAEQLRHKLYQPSSELTEGEQRLPIKL
VHLNKSPVLAPAKTLTEDNADRLGLDRQQCLHNLSLIKNSPGLVQKLQDVFDTEPESIEK
DADHALYSGGFIGDADKSRCEQVRLSEPEQLTGLDWQFEDPRLNTLLFRYRARNYPQTLT
EAEMNRWQRHRQYRLTAPDSPASINLTEFAEQLEILSESVKEDPNKLAILRALYQYASEL
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgccggtggcaacacatcaacccagtttattctggcacgattacgaaacctggggggcc
aacccggttaaggacgttcctgcccaatttgctggtgtgagaacggatctggagcttaat
atcatcgaagagcctgtagaatggttctgccagatccccaacgactacctgccccatccc
caggcctgtcttatcaccggtatcactcctcagcagagcctgagagacgggatgaacgaa
gccgagttcgcccggcacattgagcatcagttcagccgcccggacacctgcgtagtgggc
tacaataatcttcgcttcgatgatgaagtgacccgccacctgctgtatcgcaatttctat
gaaccttacgcaagagagtggcaaaacggcaacagccgatgggacatcattgatatggtc
cgtgcctgctatgccctgcgccctgaaggcattgaatggccggagagagaagacggcagc
ccgagctttaagctggagcatctaacccaagccaacgggcttggccatgaccgggctcac
gatgcgatgtccgatgtatacgccaccatcgatatggcgcgcctgatcaagcaaaaacag
cctaagctctatcactacctgtttggtctgcgcaagaaatcagcggttaaggcccttatc
gattatcacaacctgacacctttagtgcatgtatcttcaaagctccctgcggttaatggc
tgtacgagctggatagtgcccgtctgtccacacccgatcaatcgaaacgccattatctgt
ctgaacctggcactggatcccagccctttgtttgatctggatgccgagcaattacgacat
aagctctatcagcccagcagcgagctgaccgagggcgaacagcgcttaccaataaaatta
gtgcatctgaataaatcaccggtactggccccggctaagacactgaccgaggataacgcc
gaccggctcgggctggatcgtcagcagtgtttacataacctgagtttgattaaaaacagc
cccggactggtgcaaaaactgcaggatgtgttcgataccgagccggaatccatcgagaag
gacgccgaccacgccttatactccggtggctttatcggtgatgcggacaagagtcgctgc
gagcaagtccgcctgagtgagccagagcagttaaccggattagactggcagtttgaggat
ccacgtctgaacaccctgctgtttcgctatcgggccagaaattatccccagactctaact
gaggcggagatgaaccgctggcaacgtcaccggcaataccgactgactgcccccgactcc
ccggccagtatcaacttaaccgaatttgccgagcagctggaaattctcagtgaatcggta
aaagaagacccgaataagctggcaattttacgcgctttgtatcaatatgcctctgagttg
taa
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