Saliniradius amylolyticus: HMF8227_01559
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Entry
HMF8227_01559 CDS
T05447
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
salh
Saliniradius amylolyticus
Pathway
salh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMF8227_01559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salh03019
]
HMF8227_01559
03009 Ribosome biogenesis [BR:
salh03009
]
HMF8227_01559
Enzymes [BR:
salh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HMF8227_01559
Messenger RNA biogenesis [BR:
salh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HMF8227_01559
Ribosome biogenesis [BR:
salh03009
]
Prokaryotic type
rRNA processing factors
HMF8227_01559
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWL12033
UniProt:
A0A2S2E314
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All DBs
Position
1649949..1652921
Genome browser
AA seq
990 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQKLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GADRHGFLPLKEIARTYFPKNYTFDGRPNIKEVIKEGQEVIVQVDKEERGQKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALNKLKLPDGMGLIVRTAGVGKSYEEL
EWDLSVLLTHWQAIEEVSKSRSAPFLIHQESNVIVRAIRDYLRRDIGEILIDNEKVYNLA
QQHIELVRPDFAQRVKRYISDVPMFNHYQVESQIESAFQREVRLPSGGSIVIDQTEALTS
IDINSSRATKGGDIEETALNTNLEAADEIARQLRLRDLGGLFVIDFIDMSPVRHQREVEK
RLNDAVRQDRARVQLGRISRFGLLEMSRQRLRPSLGESASNVCPRCKGHGTVRGTESLAL
SVLRLLEEEAIKENTGQIEAQVPVSVATYLLNEKRDSVRGIENRHNVSLLIIPNPNLETP
NYRVSRLRSDEVITEASYNLELDKEAPEPSASTPSEMAKKREEPALQGMTAPKKAAPQVA
QPSLFDRIVKWLKSLLESEESTQSSSTDSGNGRGQQRRRGGRQQQGNRGGRGRQQDNKGG
NKDNRRKPASEKKAGPAKDKAEPKKPQNRSNKKDQAPKTDNKPEQGPKNAEQKSKAQQNV
ERRQRRDRRRSVRIQTDAETASQAVEAKSTDTEVNTPAPAKKENAAVTEPQATQTQTEQV
ETQAQQGNDTQAESNESKDSGRNRSRRSPRHARASGQRRRKEQQPQDTETSAEAQSEKAE
PSASEQASQVESKPQVPASEVESKQAPSPAKPDAKASSSTQTAETDTQPEQGEFALEPTK
PEATPEAPANKSEEEPVAQAETETSAAAQAEPQKTDDTQAPDEQQAPLFSESEEQPSEVT
VDKASDASKAKAESNGKASGTERKERVPARFVSRPMTRPESVEGELPSIQITGIANDARP
EFEISGLVALGSKGRSQASAPATNPASQDS
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaatgcaactcaacaagaagagttgcgtgttgccctggtagat
gggcagaagctttacgatttagacattgaaagtcccggtcatgagcagaaaaaagccaat
atctacaagggcaaaatcacccgagtcgagcccagtctcgaagccgcctttgtcgattat
ggcgccgaccgccacggcttcctccccttaaaagaaatcgcccgcacttacttccccaaa
aactacaccttcgatggtcgccccaacattaaagaagtgattaaagaaggtcaggaagtc
attgtacaggttgataaggaagagcgcggccagaaaggcgcggccctgaccacctttatc
agcctcgcgggcagctatctggtattaatgcccaacaaccctcgcgccggcggaatctcc
cgacgcattgagggggatgagcgtaccgaacttaaaagtgccttaaacaagctgaaactg
cccgacggcatgggactgatcgttcgtacggccggtgtgggtaaatcctacgaagagctc
gagtgggatctgagtgtattgctgacccactggcaggccattgaggaagtatctaagtcc
cgctcggcgccgttcctgatccatcaggaaagcaacgtcatcgtgcgcgccattcgtgat
tatttgcgccgcgatatcggcgagattctgatcgacaacgagaaggtctacaacctggca
cagcagcatatcgaactggtccgccccgattttgcgcaacgggttaagcgctacatcagc
gatgtgcccatgttcaatcactatcaggtagagagtcagatcgagtcagccttccaacgg
gaagtgcgcttaccctctggcggttccatcgttatcgatcagaccgaagccctgacctcc
atcgatattaactcctcgcgcgccaccaaaggcggcgacattgaagaaacggcactgaat
accaacttggaagccgcggacgaaatcgcccgccagctacgtctgcgcgacctgggcgga
ttgtttgttatcgactttatcgatatgagcccggtgcgccaccaacgagaagtggaaaag
cgtctgaatgacgccgtccgtcaggacagagcacgagttcagctgggtcgtatttcccgt
tttggtctgttggaaatgtcccgtcagcgcctgcgtccgtcactgggtgagtcagcctcc
aatgtctgcccccgctgtaagggccatggcacggttcgtggaaccgaatctttggcgtta
tccgtattgcgcttactggaagaggaggccattaaggaaaacaccggccaaatcgaagct
caggtgcccgtatccgtggctacctacttgttgaatgaaaagcgcgactcggtacgaggc
atcgaaaatcgtcacaatgtcagtttgctgatcatccctaacccgaatctggaaaccccc
aactaccgcgtgtcccgcctgcgctccgatgaagtgatcaccgaggccagctacaacctg
gagttggataaggaagcgcctgagccgagtgccagcaccccatctgaaatggccaaaaag
cgtgaagagcctgcgttgcagggtatgacagcgcccaaaaaagccgctcctcaggtggcg
cagccttccctgtttgaccgaattgtcaaatggctgaagtctctgctggaatcggaagag
tccacgcagtcgtcctctacagactccggaaatggacgcggtcagcagcgccgccgcggc
ggccgtcaacaacaaggcaaccgtggtggccgtggtcgccagcaagataataagggtggc
aataaggacaaccgccggaaacctgcgtcagagaaaaaagccggtcccgccaaagacaag
gcggagccgaagaagcctcaaaaccggtctaacaaaaaagaccaggcgccaaaaaccgat
aacaaaccagaacaaggcccgaagaacgccgagcaaaagagtaaggcgcaacagaatgtg
gaacgccgtcagcgtcgggatcgtcgccgttcggtgcgcattcaaactgacgcagagacc
gccagccaagcggtagaggccaagagcactgacacagaagtcaacacgcctgcgccagcc
aagaaagaaaacgcggcagtgaccgagcctcaggccactcaaacccaaactgaacaggtt
gagactcaggctcagcaaggcaacgacactcaggcagaaagcaacgagagcaaagacagc
ggccgtaacagaagccgccgtagtcctcgtcatgcacgggcatcgggacagcgtcgccgt
aaagagcagcaacctcaggacaccgaaacgtcagccgaagctcagtctgagaaggcagag
ccttccgccagtgagcaggcgtctcaagtggagagcaaaccgcaagtccctgcttctgaa
gtagagtctaagcaagctccctccccggccaaaccagatgcaaaggcgagctcaagtact
caaactgctgagactgatacccagcctgaacagggcgaatttgcgctggagcctactaag
ccggaagcgacacccgaggcacctgccaataagtcagaagaagaacctgtagctcaggca
gagacagagacgagtgcagccgcccaggctgagccccagaagaccgacgacactcaggct
cccgacgagcagcaggcaccgctgtttagcgagtcagaggagcagccttctgaggtgacg
gtcgacaaggcatctgacgcatcaaaagccaaagctgaaagcaatggaaaagcttccggt
actgaacgcaaagaacgagtgccggcgcgttttgtctctcgccccatgactcgccctgag
tcagtggagggcgagttgccttcgatacaaattaccggcatcgccaatgacgcccgcccc
gagtttgaaatctcaggtctggtggccttgggcagtaagggacgcagtcaggcatcagcc
ccggcaaccaacccggctagccaggacagttaa
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