Saliniradius amylolyticus: HMF8227_02813
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Entry
HMF8227_02813 CDS
T05447
Name
(GenBank) RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
salh
Saliniradius amylolyticus
Pathway
salh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HMF8227_02813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salh03019
]
HMF8227_02813
Enzymes [BR:
salh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HMF8227_02813
Messenger RNA biogenesis [BR:
salh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HMF8227_02813
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWL13262
UniProt:
A0A2S2E6U9
LinkDB
All DBs
Position
complement(3000796..3002058)
Genome browser
AA seq
420 aa
AA seq
DB search
MQTTYLTDTHFSELALHPDVVKALSESNFQHCTPIQALSIPTMVEGRDVAGQAQTGTGKT
IAFLAGTFHHLLKAENPSGNQPRAIIMAPTRELAVQIFNDAEMLSQHTGLSLGLIYGGEG
YQSQREVLEKGVDIIIGTTGRIIDYYKQGLFSLEHIQVAVLDEADRMFDLGFIKDIRYLF
RRMPEATKRLSMLFSATLSMRVQELAYEHMNDPVHLQIEPQQMTASRVQEELFYPSNEDK
MLLLLTLLEEEWPDKAIVFANTKHACEKLYDWLKADKHRVGLLSGDVPQKKRLSIMDQFS
KGKLDILVATDVAARGLHIEKVTHVFNYDLPDDAEDYVHRIGRTGRAGKSGHAISFACEK
YALNLPAIEEYIRHPIPVSDYDASALLDDLTPPKPHYKKRMQSGKNYNKGRSRNPKKSNR
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaacttatttaactgacactcacttctccgaattggctctgcatcctgatgtg
gtcaaggccctcagtgagagtaacttccaacattgcacgccgattcaggccctcagcatt
cctaccatggtggaaggacgagatgtggccggacaggcacaaaccggaaccggtaaaact
atcgcatttcttgccgggacattccaccaccttctgaaagctgaaaatccatcgggcaat
caacccagagctattatcatggctcctacgcgcgagctggcggttcagatcttcaatgat
gccgagatgttgagccagcacactggtttatcgcttggccttatatatggtggtgagggc
tatcaaagtcaacgggaagtgctggaaaaaggggtagatatcatcatcggcacgaccggc
cgtatcatcgattactataagcagggcttgttctcactggaacatattcaggtggcggtg
ctggacgaagcggatcgcatgtttgatttgggcttcattaaagacatccgctatttattc
cgtcgcatgcctgaggctacgaaacgattgagtatgttgttctcggcgaccctgtcgatg
agggtgcaggaactggcttatgaacacatgaacgatcctgttcacttgcaaatagagcct
cagcagatgaccgccagccgcgtgcaggaagagctgttctatccttccaacgaagacaag
atgttgttgttgctaacactgttggaagaggaatggccggacaaggctatcgtttttgcc
aatacgaaacacgcctgtgaaaagctttatgactggctgaaagcagacaagcaccgtgtg
ggcttgctcagtggtgatgtgccgcagaaaaagcgcctcagcattatggatcagtttagt
aaagggaagttggacatcctggtggccacagatgtggcggcccggggcctgcatattgaa
aaagtgactcatgtgtttaactacgatctgcccgatgacgcagaagactacgtgcatcgc
atcgggcggactggtcgtgcggggaagagtggacatgccatcagctttgcctgtgaaaaa
tacgcactgaacctgccggcaattgaggagtacatccgccatcccatccctgtgagtgat
tacgatgcctcggcgttgctggacgacttgacaccgcccaagccccactataaaaagcgt
atgcaaagtggtaaaaactacaataaagggcgttcacggaatccaaaaaagagcaatcga
tga
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