Streptomyces albireticuli: SMD11_4542
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Entry
SMD11_4542 CDS
T05230
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
salj
Streptomyces albireticuli
Pathway
salj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SMD11_4542 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salj03019
]
SMD11_4542 (rne)
03009 Ribosome biogenesis [BR:
salj03009
]
SMD11_4542 (rne)
Enzymes [BR:
salj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SMD11_4542 (rne)
Messenger RNA biogenesis [BR:
salj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SMD11_4542 (rne)
Ribosome biogenesis [BR:
salj03009
]
Prokaryotic type
rRNA processing factors
SMD11_4542 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ARZ70141
UniProt:
A0A1Z2L7E3
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All DBs
Position
5204466..5208452
Genome browser
AA seq
1328 aa
AA seq
DB search
MLEPTEPTNNPDSGPGDTLPPRRRRRAASRPAGPPSAGTEAAVTVETTAPASTEAPAAAP
AEETPAAAEAPATPARPRRRATRKATAPAGAPRKGEQAAEAPAEAVAEPAPEVAEAAEAK
PARTRRRAVRKATAPAGAPQAAETAPAAPEAPAAAEEPAAEEAPAEAPVETPAAAPARTR
RRAVRKATAPAGAPQAAETVVEPVAEPAPAVTEAPEEAVAEAAETPEAKPARTRRRAVRK
ATAPAGAPQAAEAEAEAEAVAEEPEAAAPVAEEAPAAEPRGRRTRRRATGGDAEQPAEAA
EAPAKGRTRRRVAAGDAEAAAAALEAAKEASRARGPVVSEAEAAPAEETAAPARGRRRAV
RPPTAVFQAPVFTEPMFQTPETAAAAAAAGPVEEEPEEEAAEPVAEQAQPAGRRRRRRRG
EPAEAAEQAVAAPAVQQDEEGEEAEGAEETEAAQEDEGDRPSRRRRRGGRRRRRGESGDA
EGELSEDEQQEAEQDEAAEEEQEEALDEESGAGSASSRRRRRRRRRSGDGAEAETGSDDP
ERTVVKVREPRKREEREPGTGFDEVQSIKGSTRMEAKKQRRREGREQGRRRVPIITEAEF
LARREAVERVMVVRQSGERTQIGVLEDNVLVEHYVNKEQATSYVGNVYLGKVQNVLPSME
AAFVDIGKGRNAVLYAGEVNFEALGMGNGPRRIETALKSGQSVLVQVTKDPIGHKGARLT
SQVSLPGRYLVYVPEGSMTGISRKLPDTERARLKQILKKIVPEDAGVIVRTAAEGASEDE
LARDVQRLQAQWEEIQKKAKSGNAPTLLYGEPDMTVRVVRDIFNEDFSKVIVSGDTAWET
IHGYVSHVAPDLTDRLQKWTSDVDVFATYRIDEQLMKALDRKVWLPSGGSLVIDRTEAMV
VVDVNTGKFTGQGGNLEETVTKNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLEANRDLV
LRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLESFSEPCVHCNGRGVIVHMDQP
TTVGGGGGGKRGKKKGKAAPAHEHDHEHVTETAEAVESAEEAEAPELEPVAVAEADLQPS
VGGDEEWFGSPAEAESAAKRGGRTRRRATRKATAPAGAPRAEREPETVVAPAAPVAEAEP
EPRAAEPEAVPVAEPVAEPVAEAPAEAAVEAPAAPVAAEEPAPAAPARTRRRATRRVSAP
AGSPADAEAAVVVVESAARPEAEEAPAEPTTAEEVTEAVVELVEQAEAAEAAEEAAPAKK
TARKTAAKTAKKAPAKKAAAKKTAAKKTTAKKTTTAKKAATKTAAKKAPAKRATKKTAEA
AAASSSED
NT seq
3987 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacccactgagcccaccaacaaccccgacagcggacccggcgacacactgccg
ccgcgtcgccgccgccgtgcggcgtcccgccccgccggcccgccgtcggcgggtaccgag
gccgccgtgacggtcgagacgaccgcccccgcgagcacggaggcgcccgcagccgccccc
gccgaggagaccccggccgccgccgaggcgccggccaccccggcccgcccgcgccgccgc
gcgacccgtaaggccaccgccccggccggcgctccccgtaagggtgagcaggccgccgag
gcgcccgccgaggccgtcgccgagcccgcccccgaggtcgctgaggccgccgaggccaag
ccggcccgtacgcgccgtcgcgccgtgcgcaaggccaccgctccggcaggtgccccgcag
gccgccgagaccgctccggccgcgccggaggccccggccgccgccgaggagcccgccgcc
gaggaggccccggccgaggccccggtcgagaccccggccgccgcccccgcccgtacccgc
cgtcgcgccgtccgtaaggccacggccccggccggtgccccgcaggccgccgagacggtc
gtcgagcccgtggccgagccggccccggccgtgaccgaggcgcccgaagaggccgtcgcc
gaggccgccgagacccctgaggccaagccggcccgtacgcgccgtcgtgccgtccgtaag
gccaccgctccggcaggtgccccgcaggccgccgaggccgaggccgaggccgaggccgtc
gccgaggagcccgaggccgccgctccggtggcggaggaggcccccgccgccgagccgcgt
ggccgccgtacccgccgccgggccaccggtggcgacgccgagcagcccgccgaggccgcc
gaggccccggccaagggccgtacgcgccgccgtgtcgccgccggtgacgccgaggccgcc
gccgccgcgctggaggccgccaaggaggcgagccgcgcccgtggccccgtggtgagcgag
gccgaggccgcgcccgccgaggagaccgccgctcccgcgcgcggccgccgccgcgccgtg
cgcccgccgaccgccgtcttccaggcgccggtcttcaccgagccgatgttccagacgccg
gagaccgccgccgctgccgccgccgcgggcccggtcgaggaggagcccgaggaggaggcg
gccgagcccgtcgccgagcaggcgcagcccgccggccgtcgtcgccggcgccgccgtggc
gagcccgccgaggccgccgagcaggccgtcgccgcccccgccgtccagcaggacgaggag
ggcgaggaggccgagggcgccgaggagaccgaggccgcgcaggaggacgagggcgaccgc
ccgtcgcgccgtcgccgtcgcggtggccgtcgccgtcgccgcggtgagtccggtgacgcc
gagggtgagctgtccgaggacgagcagcaggaagccgagcaggacgaggccgccgaggag
gagcaggaggaggcgctggacgaggagtccggcgcgggttccgccagcagccgccggcgt
cgccgtcgccgtcgccgcagtggtgacggcgccgaggccgagaccggcagcgacgacccg
gagcggaccgtcgtcaaggtccgcgagccccgcaagcgcgaggagcgcgagccgggcacg
ggcttcgacgaggtgcagtccatcaagggctcgacccgcatggaggcgaagaagcagcgc
cgccgtgagggccgcgagcagggccgccgccgcgtgccgatcatcacggaggccgagttc
ctggcccgccgtgaggccgtcgagcgtgtgatggtcgtccggcagagcggtgagcgcacc
cagatcggcgtgctggaggacaacgtcctcgtcgagcactacgtcaacaaggagcaggcc
accagctacgtcggcaacgtctacctgggcaaggtccagaacgtgctgccgtcgatggag
gccgccttcgtcgacatcggcaagggccgcaacgcggtcctgtacgccggtgaggtcaac
ttcgaggcgctcggcatgggcaacggcccgcgccgcatcgagaccgcgctgaagtccggc
cagtccgtgctcgtgcaggtcaccaaggacccgatcggtcacaagggcgcccgcctgacc
agccaggtctcgctgcccggccgctacctggtctacgtgcccgagggctcgatgaccggt
atcagccggaagctgcccgacaccgagcgcgcccgtctgaagcagatcctcaagaagatc
gtccccgaggacgcgggcgtcatcgtccgtaccgccgcggagggcgcgagcgaggacgag
ctggcccgtgacgtgcagcgtctccaggcgcagtgggaagagatccagaagaaggcgaag
agcggcaacgccccgaccctgctgtacggcgagccggacatgaccgtccgcgtcgtgcgc
gacatcttcaacgaggacttctccaaggtcatcgtcagcggtgacaccgcgtgggagacc
atccacggctacgtctcgcacgtcgccccggacctcacggaccggctccagaagtggacg
tcggacgtcgacgtcttcgccacgtaccggatcgacgagcagctgatgaaggcgctggac
cgcaaggtctggctgccgagcggcggctcgctggtgatcgaccggaccgaggcgatggtc
gtcgtcgacgtcaacaccggcaagttcaccggccagggcggcaacctggaggagacggtc
accaagaacaacctcgaggcggccgaggagatcgtgcgtcagctgcggctgcgcgacctc
ggtggcatcgtggtgatcgacttcatcgacatggtgctggaggccaaccgcgacctcgtg
ctgcggcgcctgctggagtgcctgggccgggaccgtacgaagcaccaggtcgccgaggtg
acctcgctgggtctggtccagatgacccgtaagcgggtcggtcagggcctgctggagtcc
ttctccgagccctgcgtgcactgcaacggccgcggcgtgatcgtccacatggaccagccg
acgaccgtcggtggcggcggtggcggcaagcgcggcaagaagaagggcaaggccgctccg
gcgcacgagcacgaccacgagcacgtgacggagacggcggaggccgtggagtccgcggag
gaggccgaggcccccgagctggagcccgtcgcggtcgccgaggccgacctccagccgtcg
gtcggcggtgacgaggagtggttcggcagcccggccgaggcggagagcgccgcgaagcgc
ggtggccgtacgcgtcgtcgtgcgacccgtaaggcgacggccccggccggtgccccgcgg
gcggagcgcgagccggagaccgtcgtggccccggccgcgccggtggccgaggccgagccg
gagccgcgcgccgcggagccggaggccgtccccgtggccgagcccgtggccgagcccgtg
gccgaggcgcccgccgaggcggctgtcgaggctccggccgcgccggtggccgcggaggag
ccggctccggccgctccggcccgtacccgccgccgggccacccgccgggtctccgcgccc
gcgggttcgccggcggacgccgaggccgccgtggtggtcgtggagtccgcggcccgtccg
gaggccgaggaggccccggcggagcccacgacggccgaggaggtcaccgaggcggtcgtg
gagctggtcgagcaggcggaggccgccgaggccgccgaggaggccgcgccggccaagaag
accgcgcgcaagacggccgccaagaccgccaagaaggccccggcgaagaaggccgccgcc
aagaagacggccgcgaagaagacgacggccaagaagacgacgaccgcgaagaaggccgcc
accaagacggcggccaagaaggctccggccaagcgggcgacgaagaagaccgcggaagcg
gccgccgcgtcctcctcggaggactga
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