Streptomyces albireticuli: SMD11_5059
Help
Entry
SMD11_5059 CDS
T05230
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
salj
Streptomyces albireticuli
Brite
KEGG Orthology (KO) [BR:
salj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salj03019
]
SMD11_5059 (hrpB)
Enzymes [BR:
salj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SMD11_5059 (hrpB)
Messenger RNA biogenesis [BR:
salj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SMD11_5059 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_25
AAA_22
AAA_11
AAA_19
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ARZ70651
UniProt:
A0A1Z2L8T9
LinkDB
All DBs
Position
complement(5770524..5773412)
Genome browser
AA seq
962 aa
AA seq
DB search
MIRTDALEQLPVRSALPGLSRALDERGVAVLCAPPGTGKTTLVPLALAGLTGPEGPRGPA
RRVLVAEPRRIAARAAARRMAWLLGEPVGGRVGFTVRGERRAGPRTVVEVVTTGVLLQRL
QRDPELAGVGTVILDECHERHLDADTAAAFLLDVRAALRPELRLVAASATTDAEGWARLL
GDAPVVEARGTSHPVDVVWAAPDRPVRPPHGMRVDPALLEHVAGVVRRALREREGDVLCF
LPGVGEISRVAGRLGGPGTLGAEVLQVHGRAPAEAQDAVLAGGSGVRRVVLATSVAESSL
TVPGVRVVVDSGLAREPRTDHARGLSALTTVRASHAAARQRAGRAGREAPGAVYRCWTEA
DDGRLPRFPAAEITVADLTAFALQAACWGDPDASGLALLDPPPSGAMAAAREVLTATGAV
GPDGRPTGRGRRMARLGVHPRLARALLDGAREVGARRAAEVVALLSEEPPRDYGDDLAAA
WRAARRGGDGYGARWRAEARRLEGALKGSAEDGTGAEAAGRDDMPGDAAGDRGGASGDST
GARGRASGSGTDGRDRPSGGGAVGRGRASGNSAGARGGASGGRSDSRGDTPGPEAGGRGG
ASGDGGRGQGSGSGSPGSRGGGRSRGPEEDGRPGAFSDDAVAGLVTALAFPERVARLRGE
GSYLMASGTGARLGEGSRLRSAPWLAVAVADRPVTAASARVLLGAVIDEDTARSAARALR
AEGEEVHWSEERRDVVARRVERLGAVELAERPLTAPDPALVRAALLDGLRSEGLGLLRWP
DGAAGLRQRLAFLHRELGEPWPDVSEEALLEGAEDWLGWELERARRRADLERLDAGKALE
RLLPWASGAAARLDELAPERLEVPSGSRIRVDYGGSQPVLAVKLQELFGLQETPRLAGGR
VPVLVHLLSPAGRPAAVTADLASFWREGYRAVRAELRGRYPRHPWPEDPSAAVATRRTNA
RR
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
gtgatccgcaccgacgccctcgaacagctgcccgtacgttccgccctgccgggcctgtcc
cgggcgctcgacgagcgcggcgtggcggtgctgtgcgcgccgcccggcacgggaaagacc
acgctggtcccgctcgccctcgccggcctgaccgggccggaggggccgcggggaccggcc
cggcgggtgctggtcgcggagccgcgccggatcgcggcgcgggccgccgcccggcgcatg
gcctggctgctgggcgagcccgtgggcggccgcgtcggcttcaccgtgcgcggcgagcgc
cgggccgggccccgcacggtggtggaggtggtcaccaccggtgtgctgctccagcgcctc
cagcgcgatccggagctggccggcgtcggcaccgtgatcctcgacgagtgccatgagcgc
cacctcgacgcggacaccgccgccgccttcctgttggacgtccgggccgcgctccggccc
gagctgcggctggtcgcggcgtccgcgacgacggacgcggagggctgggcccggctgctg
ggcgacgcccccgtggtggaggcgcgggggacgtcccaccccgtcgacgtggtctgggcc
gcgccggaccggccggtgcggccgccgcacgggatgcgggtggacccggcgctcctggag
cacgtcgcgggcgtggtgcggcgggcgctgcgggagcgggagggcgacgtgctgtgcttc
ctgcccggtgtcggcgagatctcccgggtggccggccggctgggcgggcccgggacgctg
ggcgccgaggtcctccaggtgcacgggcgggccccggcggaggcgcaggacgcggtgctg
gcgggcggctcgggcgtccgccgggtggtgctggcgacgtcggtggcggaatccagcctg
accgtccccggggtgcgcgtcgtggtcgactccggtctggcgcgcgagccgcgcacggac
cacgcgcgcgggctgagcgcgctgacgaccgtacgggcgtcccacgcggccgcccggcag
cgcgcgggccgcgccggccgtgaggcgccgggcgcggtgtaccgctgctggaccgaggcc
gacgacggccggctgccgcgcttccccgccgcggagatcacggtcgcggacctgacggcg
ttcgcgctccaggccgcgtgctggggcgaccccgacgcgtcgggcctcgccctcctcgac
ccgccgccgtccggtgcgatggccgcggcgcgcgaggtcctgaccgccacgggagccgtc
ggcccggacggccgccccaccggccgcggccgccgcatggcccggctgggcgtccaccca
cgcctggcgcgcgccctgctggacggcgcgcgcgaggtcggcgcgcgccgggcggccgag
gtggtcgccctgctgagcgaagagccgccccgggactacggggacgacctggcggcggcg
tggcgcgcggcacggcgcgggggcgacggatacggcgcgcggtggcgggccgaggcgagg
cggctggagggggcgctcaaggggagcgcggaggacgggacaggggcagaggcggccggt
cgggacgatatgccgggggacgccgcgggcgaccggggcggggcctccggagacagcacg
ggtgcccgaggcagggcctccggtagcggcacggacggccgggacaggccctccggcggc
ggtgcagtcggccgcggcagggcttcgggaaacagtgcgggtgcccgaggcggggcttcg
ggaggcagatcggacagtcgaggcgataccccgggacccgaggcaggcggccggggcggt
gcctcgggggacggtggccggggtcaaggctcaggaagcggcagcccgggttcacggggc
ggcggccggagccggggcccggaagaagacggccggccgggggccttctccgacgacgcc
gtcgccgggctcgtcacggcgctcgcctttcccgagcgcgtggcccgtctgcgcggcgag
ggctcgtacctcatggcgtccggcaccggcgcccggctcggcgaggggtcgcggctgcgc
agcgcgccctggctcgcggtggccgtggccgaccggcccgtcacggcggcctcggcgcgg
gtcctgctcggcgcggtgatcgacgaggacacggcccggagcgcggcgcgcgccctgcgc
gcggagggcgaggaggtccactggtccgaggagcggcgcgatgtcgtggcccggcgcgtc
gagcggctgggcgcggtggagctggccgagcgtcccctgacggcgccggaccccgcgctc
gtacgggccgccctgctcgacggcctgcggagcgaggggctgggcctgctgcgctggccg
gacggggcggcggggctgcggcagcggctggccttcctccaccgcgagctcggggagccg
tggccggacgtgtccgaggaggcgctgctggagggcgcggaggactggctcggctgggag
ctggagcgggcccgcaggcgggccgatctggagcggctggacgcgggcaaggcgctggaa
cggctgctgccgtgggcgagcggggccgccgcgcgcctggacgagctggcgccggagcgt
ctggaggtgccgagcggttcccggatccgggtggactacggcgggtcgcagccggtgctg
gcggtcaagctccaggagctgttcggcctccaggagacgccgcgcctcgcgggcggccgg
gtcccggtgctcgtacatctgctgtccccggcggggcggccggcggcggtgacggcggac
ctggcgtcgttctggcgggaggggtaccgggcggtgcgggcggaactgcgggggcggtat
ccgcggcatccctggccggaggacccgtcggcggcggtggcgacgcggcggacgaacgcg
cggcggtga
DBGET
integrated database retrieval system
