Salinimonas iocasae: FBQ74_01905
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Entry
FBQ74_01905 CDS
T06006
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
salk
Salinimonas iocasae
Pathway
salk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FBQ74_01905 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salk03021
]
FBQ74_01905 (rpoC)
03400 DNA repair and recombination proteins [BR:
salk03400
]
FBQ74_01905 (rpoC)
Enzymes [BR:
salk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FBQ74_01905 (rpoC)
Transcription machinery [BR:
salk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FBQ74_01905 (rpoC)
DNA repair and recombination proteins [BR:
salk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FBQ74_01905 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QCZ92305
UniProt:
A0A5B7YA75
LinkDB
All DBs
Position
443346..447527
Genome browser
AA seq
1393 aa
AA seq
DB search
MKDLLKFLKQQNKTEEFDNIRIGLSSPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESYVVTEPGLTTLERSQLLNEEEYLDALEENGDEFDAKM
GAEAVFDLLKVLDVDADVAAMREELPSINSETKRKKITKRLKLLESFQQSGNKPEWMIMT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKLVEREAPEVWDVLDEVIREHP
VLLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYLTREKVNGKGEGMVFTSPNEAEKAYRTD
AAELHARVKVRITEYDVAEDGTKTERVTLTDTTVGRAIFSLILPKGLPFDLINQAMGKKQ
ISRLLNACYRTLGLKDTVIAADQIMYSGFHYAMIAGASVGIDDMVIPAAKKEIIDDAEAE
VIEIQEQFQNGLVTAGERYNKVIDIWSNANEKVAKAMMDNLKSDIVVNAEGEEEEQQSFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITNDDCGTFEGVKMSPLIEGGDVVEPLRERVL
GRVVAEDVYKPGTDEVLVERNVLLDEALVDMLEQNSVDQIQVRSVITCDNDFGVCAKCYG
RDLARGHMVAKGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKTAGTLKL
QNAKTVRNTEEKLVVVSRSTELTVTDSHGREKERYKVPYGAVLSVDESAEVNAGDIVASW
DPHSHPIIVERPSKVSFSDIDDSNTEMQQDELTGLTRIVVKDLAKVNAKEPKLILESDEI
GLQEIRLPSFTTIEASEGKVAQTGDVLARIPQESSKTRDITGGLPRVADLFEARKPKEPA
ILAEHSGMVGFGKETKGKRRLVITRKDSGDQYEEMIPKWRQLNVFEGEQVERGEVIADGP
ESPHDILRLRGISAVSNYIVNEVQEVYRLQGVKINDKHIEVVIRQMLRKCIITASGDSQF
LEGEQVEVANVKIANRELERQGKMPALYETQLLGITKASLSTESFISAASFQETTRVLTE
AAVQGKEDDLRGLKENVIVGRLIPAGTGFAYHERRMQKRQEQLEEMSVSAAEAEQALTEA
LNAETSGESSTDE
NT seq
4182 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctaaagcaacaaaacaagacagaagaattcgataatatt
cgaattggcctgtcttcacctgagatgatccgttcgtggtcatttggtgaggttaaaaag
cctgaaaccatcaattaccgtacctttaaaccagagcgtgacggcctgttctgtgcacgt
atctttggtccggtaaaagactatgaatgtttgtgcggtaagtacaagcgtctcaagcat
cgtggtgttatttgtgaaaaatgtggcgttgaagttacattaactaaagtacgccgtgag
cgtatgggtcacattgaactggccagcccggttgcacacatctggttccttaaatcactg
ccatctcgtatcggtttgatgctggatatgacattgcgtgatattgaacgcgtattgtat
ttcgaatcttacgttgtcactgagccaggtcttaccacgcttgagcgtagccagttactt
aacgaagaagaatatctggacgcgcttgaagaaaacggtgacgagtttgacgcgaagatg
ggtgctgaagcggtatttgacctgcttaaggtactggacgtcgacgccgatgttgctgca
atgcgtgaagagttacctagcattaactctgaaactaagcgtaagaaaattaccaagcgt
ctgaagctgcttgaatcattccaacagtctggcaacaagccagagtggatgatcatgact
gtgctgccagttctgccaccggatcttcgtcctctggtaccactggacggtggtcgtttt
gcgacttctgacctgaacgatctgtatcgtcgtgtaatcaaccgtaataaccgactgaag
cgtctgttggatctggctgcgccggatatcatcgtacgtaacgaaaagcgtatgcttcag
gaagcggtagatgcgctacttgataacggtcgtcgtggtcgtgctattaccggttctaac
aaacgtcctctgaaatcgcttgccgatatgattaaaggtaagcaaggtcgtttccgtcag
aacttgctaggtaaacgtgttgattattctggtcgttctgtaatcactgttggtccgaca
ctgcgtctgcaccagtgtggtctgcctaagaaaatggctctggaactgttcaagccattc
atctatggcaagttagaaggccgtggtttggcgacaactatcaaagccgccaagaaactg
gtagagcgtgaagcgccggaagtatgggatgttcttgatgaagttattcgtgaacacccg
gtactgcttaaccgtgcacctacgctgcacagactgggtatccaggcatttgaaccaacc
ctaatcgaaggtaaagcaattcagttgcacccattggtgtgtgcggcctataacgctgac
ttcgatggtgaccaaatggctgttcacgtaccgctgacactggaagcccagttagaagct
cgtgcgctgatgatgtctaccaacaacatcttatctcctgcgaatggtgagccgattatc
gttccttcacaggacgttgtattgggtctttattacctgacacgcgaaaaggtgaacggt
aaaggtgaaggcatggtatttaccagcccgaacgaagcagaaaaagcataccgtactgac
gcagctgagctgcatgctcgcgtaaaagtacgtattactgagtatgatgttgccgaagat
ggcacgaaaacagagcgtgtaacgctgaccgacaccacggttggccgtgcaattttctct
ctgattttgcctaaaggcttaccatttgacctgatcaatcaggccatgggtaaaaagcaa
atctcgcgtttgcttaacgcttgctaccgtacactgggtttgaaagatactgttatcgca
gctgatcaaatcatgtacagcggcttccattacgcaatgatcgccggtgcctctgttggt
attgatgacatggtcatcccggcagcgaagaaagagatcatcgacgacgctgaagcagag
gttatcgagatccaggaacagttccagaacggtcttgtcactgctggtgagcgttataat
aaagttattgatatctggtcaaatgccaacgaaaaagttgccaaggccatgatggataac
cttaagtctgacatcgtagttaacgctgaaggcgaagaggaagagcaacagtcatttaac
tctgtttatatgatggccgactcgggcgctcgtggtagtgccgctcagattcgtcagttg
gcgggtatgcgtggtctgatggcgaaaccagacggttcaatcatcgaaacacccatcacg
gctaacttccgtgaaggtctgaacgtattgcagtacttcatctcgacgcacggtgcgcgt
aaaggtcttgccgataccgcactgaaaacagctaactcaggttatctgacacgtcgtctg
gtagatgtggcgcaagatttggttattaccaatgatgactgtggcacattcgaaggcgtt
aagatgtctccgcttatcgaaggtggtgatgttgtagaaccacttcgtgaacgggtactg
ggtcgtgttgtagcagaagatgtttacaagccgggtacagacgaagtgctggttgagcgt
aatgtgcttctggatgaagcattggtagatatgcttgaacagaattctgtggaccagatt
caggtacgctctgtaatcacctgtgataatgactttggtgtatgtgctaagtgttacggt
cgtgaccttgcgcgtggccacatggttgctaaaggtgagtctgtcggtgtaattgccgca
cagtctatcggtgagccaggtacacagcttacgatgcgtacattccacattggtggtgcg
gcatcgcgggcatcagcagaaaacagcgtacaggttaagactgccggtacacttaaactg
caaaatgctaaaacagttcgcaatactgaagaaaagcttgttgttgtatcacgttcaacc
gagttgactgttactgactcccacggccgtgagaaagagcgctataaagtgccttacgga
gcggtattgtctgtggacgaaagtgcagaggttaatgctggcgatatcgttgctagctgg
gacccgcatagtcacccaatcatcgttgagcgtccgtcgaaagtcagcttctctgatatt
gatgactcaaacacggaaatgcagcaggatgagctgacaggtcttacacgtatcgtggtt
aaagatctggcgaaggtaaatgcaaaagagcctaagctgattcttgaaagtgacgagatt
ggtctgcaggaaattcgtctgccaagctttaccaccattgaagcgtctgaaggtaaggtt
gcccagacaggtgatgtactggcacgtattcctcaggaaagttcgaaaacacgggatatc
actggtggtctgccacgagttgctgacctgttcgaagctcgtaagcctaaagagcctgct
atccttgctgaacattctggtatggttggttttggtaaagagacgaaaggtaaacgtcgt
ctggttatcacgcgtaaagattccggtgaccaatacgaagagatgattccgaagtggcgt
caacttaacgtgtttgaaggtgaacaggtagaacgcggtgaagttatcgccgatggtcct
gagtcgccgcatgatatcctgcgtctacgtggtatcagcgctgtatcgaactacatcgtg
aacgaagttcaggaagtttaccgactgcagggtgtaaaaattaacgataagcacattgaa
gtcgttatccgacaaatgctgcgtaagtgtattattacagcttcaggcgacagccagttc
cttgaaggtgaacaggttgaggtagcaaacgttaagattgctaaccgtgaacttgagcgt
cagggcaaaatgccggcactgtatgaaacacagcttctgggtataactaaagcgtcactg
tctacagagtcgttcatttcagcggcgtcgttccaggaaacaacgcgcgttctgactgaa
gctgcggtacagggtaaagaagacgatttacgtggtcttaaagaaaacgtaattgttggt
cgtctgatccctgcaggtactggttttgcttatcatgagcgtcgtatgcagaagcgtcag
gaacagctggaagaaatgtcagtatctgctgctgaagcagaacaggcgttaactgaagca
ctgaacgcagaaacaagcggtgaatcatctactgatgagtaa
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integrated database retrieval system
