Salinimonas iocasae: FBQ74_09800
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Entry
FBQ74_09800 CDS
T06006
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
salk
Salinimonas iocasae
Pathway
salk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FBQ74_09800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salk03019
]
FBQ74_09800
03009 Ribosome biogenesis [BR:
salk03009
]
FBQ74_09800
Enzymes [BR:
salk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FBQ74_09800
Messenger RNA biogenesis [BR:
salk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FBQ74_09800
Ribosome biogenesis [BR:
salk03009
]
Prokaryotic type
rRNA processing factors
FBQ74_09800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QCZ95194
UniProt:
A0A5B7YHZ9
LinkDB
All DBs
Position
2222873..2226130
Genome browser
AA seq
1085 aa
AA seq
DB search
MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDYGAE
RHGFLPLKEIARTYFPKGYKFEGRPNIKDVIKEGQEVIVQIDKEERGQKGAALTTFLSLA
GSYLVLMPNNPRAGGISRRIEGDERTELKQALSKLELPDGMGLIVRTAGVGKSYEELEWD
LRVLLKHWQAVCEEADKRPAPFLIHQESNVIVRAIRDYLRRDIGEILVDKTAVYEQAVQH
IELVRPDFANRVKKYDGGVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTSIDI
NSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVENRLK
DAVRSDRARVQLGRISRFGLLEMSRQRLRPSLGESSHHVCPRCSGHGTIRGTESLALSIL
RIIEEESIKDNTGQIEAQLPVPVATYLLNEKRKSVNVIEKRHGVQLLIIPNPNLETPHYE
VSRRRPDELVDDVSYGVTLIDTPQTDADKPAATPAKREEPAIKGMVAPDAAPKAPVKPEA
KQEASSPSLLSRISGWLGGLLGGGSAKEEQEAEEARKEREKQSRSNQRRGGDNRNRKPRN
NNQRRRKPADSQERDDNNKGQQKPQQDKRSGKPGSQNRKPRKQQRDEKPDNREVKDQHDD
KSGKDSQKDTQSAPKKKQVAERRKRRDMRRSVRVQKDDGQANEPNNTQSQPKTENQTAKP
ESRQPEADKTPAAAQKSHDVADTAQTTSDTSVSSHSEQQEGANEEKRDNNASRGRSRRSP
RHVRAAGQRRKKGAQEDSQTQSQEDNSDTAAQQQSAPAQQETIATPVTDASQMQAEKADN
ADASASEQNEQRAPEKMKAQTAQPVAYDEKSEAAAFAPESDSASEDAKQTLTQQEDQSVN
SEQSQTTGEPVEMPDKVDAQAIQSSEDHKQDELALDVPDTTAKPDEKPREKYRADGQRLD
SQQNAPQQVEINLDSEDDAQSSDTSNADLEVGKSDEAQVSQKPATSDKSVELASANLAAS
GRGKIRVSHPSAVPETVNTEFQEVNLTARKDDDRPSLTVSGKRAVQSEAKSRASAPATNP
GNNAA
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgttaataaatgcaactcagcaagaagagttgcgtgttgcccttgtagacgggcagcgt
ttgtatgatttggacatcgaaagccccggtcatgagcagaaaaaggccaatatctataag
gggaaaatcacccgcgtagagcctagcctcgaagctgcttttgtcgactatggcgcagag
cgtcacggattcctccccttaaaagaaatcgcccgcacttactttccaaaaggctataaa
ttcgaaggccggcctaacatcaaagatgtgattaaagaaggccaggaagttattgttcag
attgataaagaagaacgcggccagaaaggcgccgccctgacaacatttttgtctttagcg
ggtagttatttggtactgatgccgaataatccccgagctggcggcatatcccgccgtatt
gagggtgatgagcgtacagagctaaaacaggcactgagcaagcttgagctacccgatggt
atgggcctgatagtacgtacagcaggtgtgggtaaatcttacgaagagctggagtgggat
ttacgggtacttctcaaacactggcaggcggtctgtgaagaagcagataagcgccctgct
ccgttcctgattcatcaggaaagcaatgttatcgttcgtgccatcagggattatctgcgt
cgtgatatcggcgaaatcctggtggataaaacggctgtctatgagcaggctgttcagcac
attgagctggtacgccccgactttgctaacagagttaaaaaatatgatggcggcgttccg
cttttcagccactaccaaatagaaagtcagattgaatcggcgtttcagagggaagttcgt
ctgccttcagggggctctattgtaatcgatccaaccgaagccctgacctctatcgatatc
aactctgcccgtgccactaagggcggtgatattgaagaaactgcgctgaacactaacctg
gaggccgcggatgaaattgcccgtcagcttcgtttacgggatttaggtgggctggttgtt
atcgatttcatcgacatgacgcctgttcgccatcagcgtgaggtagaaaatcgcctgaaa
gatgccgtgcgctcagaccgtgcccgtgtgcagttgggtcgtatttcccgctttggcctg
ctagagatgtcgcgccagcgtctgcgcccttctctgggtgaatccagtcaccacgtatgc
ccacgctgctcaggccacggcactatacgcggaacagaatccctggctctgtctatcctg
cgcatcatcgaagaagaaagtattaaagataacaccggtcaaattgaggcccagctacct
gtgcccgtggccacctatctgcttaacgaaaagcgcaagtctgttaatgtgatagaaaag
cgtcacggtgttcagcttctgattattcctaatccgaatctggaaaccccgcattatgaa
gtcagtcgtcgtcgccctgatgaactggttgacgatgtcagttacggtgtaacgcttata
gatacaccacaaacagatgccgacaaaccggctgcgaccccggctaaacgcgaagagccg
gccattaaaggcatggtagcgcctgacgctgcgcctaaagccccggtcaagccggaagcc
aaacaggaagcatccagcccgtcattactttcccgcatatctggctggttaggtggtctg
cttggcggtggttctgccaaggaagagcaggaagcagaagaagcacgcaaagagcgtgaa
aagcagtctcgcagcaatcagcgtcgtggtggtgacaatcgtaaccgcaagccgcgcaac
aacaatcagcgacgtcgtaaacctgcggacagtcaggaacgcgatgacaacaataagggt
cagcagaagcctcagcaggataagcgttcaggtaagccgggatcgcaaaatcgcaagcct
cgtaaacagcagcgtgatgaaaagccggataaccgtgaagtaaaagaccagcacgatgat
aagagtggcaaggattcacagaaggacacgcagtctgcgccgaagaagaagcaggtagct
gagcgccgtaaacgccgcgatatgcgacgctctgttcgggttcaaaaagatgacggtcag
gcaaacgagccgaacaacacacagtctcagccgaaaacagagaaccaaactgctaaaccg
gaaagccgtcaacctgaagcagacaaaacgcctgcagcagcgcagaaatcgcatgatgtg
gccgatacagcccaaacaacatctgatacatcggtttcatcgcacagcgaacagcaggaa
ggcgccaacgaagaaaagcgtgacaataacgcaagtcgtggccgcagtcgccgttctcca
cgccatgttcgtgccgcgggccagcgacgcaagaaaggcgctcaggaagacagtcagaca
caaagtcaggaagacaacagtgatactgcagcgcagcagcaatctgctccggctcaacag
gaaaccatcgctacaccggtaaccgatgcttctcaaatgcaggctgaaaaagcagataat
gccgatgcttctgccagtgagcagaacgaacagcgcgcacctgagaagatgaaagcacaa
accgctcaacctgttgcgtatgatgaaaaatcagaagccgctgccttcgcaccagagtca
gactcagcttcggaagatgcaaagcaaacgctgacccagcaggaagatcaatcggtcaac
tcggagcagagtcagactaccggagagccggttgagatgcccgataaagttgacgcacag
gctattcaaagcagcgaagaccataaacaggatgagctggctttggatgtcccggatacg
acggctaaacctgacgaaaaaccgcgtgaaaagtaccgtgcggatggtcagcggctggat
agtcagcaaaacgcgcctcagcaggttgaaataaacctggacagcgaagatgacgcgcaa
agcagcgacacgtccaatgcggatcttgaggtgggcaaatctgacgaagcgcaagttagt
caaaagcctgcaacatcagataaatccgttgagcttgctagcgccaaccttgctgccagt
ggcagaggaaaaatacgcgtatcgcatcccagcgcagtaccggaaactgtcaacactgag
tttcaggaggtcaatctgaccgcacgtaaagatgatgatcgtccatctctgactgtatct
ggtaaacgagctgtgcaatcagaggcgaaatcccgcgcttctgcgccagcgactaaccca
ggcaataacgcggcctga
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